AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resistance genes, or resistome.
thanks for your great contribution setting up this pipeline!
Would it be feasible to add gene or genome size to the annotation files to allow for an easier TPM or FPKM calculation or maybe even build this into the pipeline as a optional output for the AMR and kraken analytic matrices?
Hi there,
thanks for your great contribution setting up this pipeline!
Would it be feasible to add gene or genome size to the annotation files to allow for an easier TPM or FPKM calculation or maybe even build this into the pipeline as a optional output for the AMR and kraken analytic matrices?
Cheers,
Daniel