AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resistance genes, or resistome.
Hello,
I am here to report something weird happening to me (I am a newby so maybe it is not a real issue).
If I run _nextflow run mainAMR++.nf -profile conda, Nextflow gets activated, shows AMR++ Nextflow Pipeline Help and then Running a demonstration of AMR++. Here the demonstration runs okay and delivers the results. 👍
If in the same folder and condition I run _nextflow run mainAMR++.nf --help, I encounter the AMR++ Nextflow Pipeline Help and again the Running a demonstration of AMR++. Apart from the fact that if run the --help I would expect (and need) only the command list, the demonstration in this case fails. 👎
I cannot understand why this is happening, and parallelly I wonder what is the use of having the demo running when I call the --help flag.
Keep in touch,
Hello, I am here to report something weird happening to me (I am a newby so maybe it is not a real issue).
If I run _nextflow run mainAMR++.nf -profile conda, Nextflow gets activated, shows AMR++ Nextflow Pipeline Help and then Running a demonstration of AMR++. Here the demonstration runs okay and delivers the results. 👍
If in the same folder and condition I run _nextflow run mainAMR++.nf --help, I encounter the AMR++ Nextflow Pipeline Help and again the Running a demonstration of AMR++. Apart from the fact that if run the --help I would expect (and need) only the command list, the demonstration in this case fails. 👎
I cannot understand why this is happening, and parallelly I wonder what is the use of having the demo running when I call the --help flag. Keep in touch,
Chiara