WARNING:root:Output directory nanomotif already exists
Traceback (most recent call last):
File "/home/apps/nanomotif/0.1.18-3.8.18/bin/nanomotif", line 8, in <module>
sys.exit(main())
File "/home/apps/nanomotif/0.1.18-3.8.18/nanomotif/main.py", line 325, in main
check_install(args)
File "/home/apps/nanomotif/0.1.18-3.8.18/nanomotif/main.py", line 292, in check_install
pileup = nm.datasets.geobacillus_plasmids_pileup()
File "/home/apps/nanomotif/0.1.18-3.8.18/nanomotif/datasets.py", line 12, in geobacillus_plasmids_pileup
pileup = dl.load_pileup(data_path, min_fraction=0.3)
File "/home/apps/nanomotif/0.1.18-3.8.18/nanomotif/dataload.py", line 32, in load_pileup
pl.scan_csv(path, separator = "\t", has_header = False)
File "/home/apps/nanomotif/0.1.18-3.8.18/polars/utils/deprecation.py", line 136, in wrapper
return function(*args, **kwargs)
File "/home/apps/nanomotif/0.1.18-3.8.18/polars/utils/deprecation.py", line 136, in wrapper
return function(*args, **kwargs)
File "/home/apps/nanomotif/0.1.18-3.8.18/polars/utils/deprecation.py", line 136, in wrapper
return function(*args, **kwargs)
File "/home/apps/nanomotif/0.1.18-3.8.18/polars/io/csv/functions.py", line 945, in scan_csv
return pl.LazyFrame._scan_csv(
File "/home/apps/nanomotif/0.1.18-3.8.18/polars/lazyframe/frame.py", line 381, in _scan_csv
self._ldf = PyLazyFrame.new_from_csv(
FileNotFoundError: No such file or directory (os error 2): /home/apps/nanomotif/0.1.18-3.8.18/datasets/geobacillus-plasmids.pileup.bed
I checked and /home/apps/nanomotif/0.1.18-3.8.18/datasets indeed does not exist.
I'm on a Linux HPC system with environment modules. This is how I installed:
Then I wanted to test the installation
This is the output:
I checked and
/home/apps/nanomotif/0.1.18-3.8.18/datasets
indeed does not exist.