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Micromeda / pygenprop

A python library for programmatic usage of EBI InterPro Genome Properties.
http://pygenprop.rtfd.io/
Apache License 2.0
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Make Step Expazy EC numbers accessible #79

Closed LeeBergstrand closed 2 years ago

LeeBergstrand commented 3 years ago

Improvement Suggestion

Some Genome Property steps have Expazy ENZYME entry numbers.

SN  1
ID  Phospho-2-dehydro-3-deoxyheptonate aldolase
DN  Phospho-2-dehydro-3-deoxyheptonate aldolase (EC 2.5.1.54)
RQ  1
EV  IPR006219; TIGR00034; sufficient;
TG  GO:0009423;
EV  IPR002480; TIGR01358; sufficient;
TG  GO:0009423;
EV  IPR006268; TIGR01361; sufficient;
TG  GO:0009423;
EV  IPR010210; TIGR01949; sufficient;
TG  GO:0009423;

For example, the above's entry number is EC 2.5.1.54 which correlates to https://enzyme.expasy.org/EC/2.5.1.54

Pygenprop should provide a programmatic interface for accessing these Enzyme Numbers.

LeeBergstrand commented 2 years ago

Add in https://github.com/Micromeda/pygenprop/pull/82