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MicronOxford / SIMcheck

SIMcheck: ImageJ tools for assessing Structured Illumination Microscopy (SIM) data quality and reliability
GNU General Public License v3.0
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mvn package fails on downloading parallel_FFTj #29

Closed tlambert03 closed 6 years ago

tlambert03 commented 7 years ago

when compiling with mvn package I'm getting an error when it reaches the parallel_fftj dependency.

it appears that the FFTj URL at the maven repo is broken: https://repo.maven.apache.org/maven2/edu/emory/mathcs/parallel_fftj/1.4/parallel_fftj-1.4.jar

I was able to build it by manually downloading parallel_FFTj at https://sites.google.com/site/piotrwendykier/software/parallelfftj and then adding the following code to the corresponding dependency in pom.xml:

<scope>system</scope> <systemPath>${project.basedir}/lib/parallel_fftj-1.4.jar</systemPath>

but addressing the dependency in pom.xml would be helpful

carandraug commented 7 years ago

Do you know of a maven repository that has the parallel fftj? As far we know, it is only available for manual download.

However, we have since found that Parallel FFTJ is not free software due to it's dependency on parallel colt (which is dependent on an old, GPL incompatible, version of AIDA). We are trying to sort it out.

tlambert03 commented 7 years ago

I understand. No i don't know of another maven repo for parallel fftj. I guess I just assumed since there was a pointer in the pom.xml that it might have worked at one point in the past... so just figured I'd point it out. Not a big deal at all. thanks!