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Midnighter / BRENDA-Parser

Classes to parse the BRENDA database.
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Argument Error #2

Closed daMogli closed 11 years ago

daMogli commented 11 years ago

When I delete the line before the error i get this error:

brenda_parser.ArgumentError: unrecognised entry: ' ' @ #8

Midnighter commented 11 years ago

Can you supply a little more information please? What BRENDA file version are you parsing? When you say that you "delete the line before the error", what error are you referring to?

daMogli commented 11 years ago

brenda_parser.ArgumentError: unrecognised entry: ' (#2,4# cyclization reaction <7>)' @ #3049469 is the orignal error. so like the other thread says I delete the blank line before. I am parsing the current BRENDA file version.

Midnighter commented 11 years ago

OK, so why do you now get an error with line 8? Did you change anything else in the file? When deleting the empty line, did you make sure to preserve the tab before "(#2,4# cyclization reaction )"?

daMogli commented 11 years ago

I did not change anything else and the tab is still there

Midnighter commented 11 years ago

So I re-downloaded the latest version of BRENDA, deleted the empty line, and parsing was successful. Is this still an issue for you?

Midnighter commented 11 years ago

With the latest update you should see no more errors due to file formatting. Feedback would be appreciated.