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MigleSur / GenAPI

Gene Absence Presence Identification tool.
GNU General Public License v3.0
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Error option -m #11

Closed ireneortega closed 2 years ago

ireneortega commented 3 years ago

I run GenAPI with -moption, but I got this error:

-----PLOTTING GENE PRESENCE-ABSENCE HEATMAPS-----
Error in cut.default(x, breaks = breaks, include.lowest = T) : 
  'breaks' are not unique
Calls: pheatmap ... scale_colours -> matrix -> scale_vec_colours -> cut -> cut.default
Execution interrupted

What went wrong?

MigleSur commented 2 years ago

Dear ireneortega,

Sorry for my late reply. I am happy to hear that you are interested in using GenAPI. I need more information about the error you're getting. Does the -m option work with the test dataset? Also, could you share the gene presence-absence matrix with me (migle.gabrielaite@regionh.dk) so I could look into the file and try to reproduce the error?

Best, Migle

ireneortega commented 2 years ago

Sorry for the delay, I was working on other tools, but I recently come back to GenAPI again for my research and I notice I opened this issue without answering. In fact I have no idea what caused the problem but I figured out that pheatmap library was not installed in the virtual machine. I've just run it again now with no problems!