awk error on custom gff files

MigleSur / GenAPI

Gene Absence Presence Identification tool.

GNU General Public License v3.0

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awk error on custom gff files #13

Closed vbonnici closed 5 months ago

vbonnici commented 2 years ago

I'm trying to run genapi one some gff files of mine, that I produced via prodigal. The script gene_ad_alignemt_against_seq.sh throws several errors, many of which at line 164. The files are available at https://github.com/vbonnici/genapit_test Please, can you help me?

MigleSur commented 2 years ago

Dear vbonnici,

I am happy to hear that you are interested in GenAPI. I tried to replicate your error but unsuccessfully. What system are you trying to run GenAPI on? Also, did you successfully run GenAPI analysis on the test dataset? Finally, you should check your ID names in gff files to make them unique within and between files.

MigleSur commented 5 months ago

Closing as it is outdated.