Syntax error on gene_db_alignment_against_seq.sh

MigleSur / GenAPI

Gene Absence Presence Identification tool.

GNU General Public License v3.0

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Closed pavlo888 closed 5 years ago

pavlo888 commented 5 years ago

Hi Migle,

I have been able to run the GenAPI pipeline, however it comes to a point when it shows the following error:

gene_db_alignment_against_seq.sh: 1: gene_db_alignment_against_seq.sh: Syntax error: redirection unexpected

Could you help me solve this issue?

Cheers, Pablo

MigleSur commented 5 years ago

Hi Pablo,

Most probably your default shell is not bash. I changed the script so now there is no ambiguity. Try cloning the repo again and rerun the script.

Best, Migle