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MiguelCos / Fragterminomics

Annotation and processing of peptides from FragPipe search results
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annotate_peptides function does not show error for mismatching identifiers #2

Open MiguelCos opened 2 years ago

MiguelCos commented 2 years ago

The for loop in the function will stop if it doesn't find a match between protein identifiers and the fasta file.

It doesn't show an error if this is the case. This should be corrected.

MiguelCos commented 2 years ago

The error was due to the format of the list containing the fasta.

Just test in annotate_peptides if the protein sequence is not a list (it should be string) and throw an error message ("Use as.string = TRUE in read.fasta()......")