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MikeAxtell / ShortStack

ShortStack: Comprehensive annotation and quantification of small RNA genes
MIT License
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csfasta support #106

Closed vojtace closed 1 year ago

vojtace commented 2 years ago

Hi, I would like to point out that since version 1.3.0 bowtie does not support colorspace data. I think that this information should be updated in the manual, which says that ShortStack can process .csfasta, but this is true only if you downgrade bowtie. Thanks!

MikeAxtell commented 1 year ago

Thank you. In the newest version of ShortStack, 4.0, all support for colorspace data is dropped. New version is currently in alpha testing and can be accessed by interested users on the ShortStack4 branch of the GitHub repo. Once we complete testing I will merge to master and make a release.