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MikeJSeo / SAM

SAM (Significance Analysis of Microarrays) shiny app
https://cran.r-project.org/web/packages/samr/index.html
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SAMr missing value error #28

Open hkarakurt opened 7 years ago

hkarakurt commented 7 years ago

Hello, I am new at SAM and I want to do it on a microarray data. I uploaded my data and clicked run but I have an error as "missing value where TRUE/FALSE needed" and I filled all blanks in expression data as "NA" and missing gene symbols as "EMPTY" or windows suddenly closes with an error I could not read because of it was too quick. Why my data has this error? How can I fix this?

I uploaded my data to Google Drive. Can someone help me about that? I use RStudio.

https://drive.google.com/open?id=0B_JS-1GnYihbMkdVNUo3a1J2Z0k

Best regards,

MikeJSeo commented 7 years ago

Hello

The class name has to be integers 1,2,...

See page 10 in the manual sam-manual.pdf

I think this was how the package was originally coded.. Hope it works

Best, Michael Seo