Closed ldutoit closed 5 years ago
Dear Ludovic and Alex,
Please try to upgrade your copy of PALEOMIX and let me know if that fixes your problem. This particular bug should have been fixed in PALEOMIX v1.2.13, while you appear to be running v1.2.4.
Best regards, Mikkel
On Wed, Nov 28, 2018 at 2:49 AM Ludovic Dutoit notifications@github.com wrote:
Hi,
we are trying to run the latest paleomix version. Everything is installed but we cannot troubleshoot the error we get back trying to run: ''' paleomix bam_pipeline run 000_makefile.yam ''' error.log https://github.com/MikkelSchubert/paleomix/files/2622508/error.log
Basically we get a truncated bam out of BWA ( see error log and attached .stderr file).
Could you maybe help us with that? Thank you so much for your help!
Ludovic Dutoit & Alex Verry University of Otago, New Zealand
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Hi Mikkel,
thank you very much for your quick reply.
Ludo
On Wed, 28 Nov 2018 at 20:14, Mikkel Schubert notifications@github.com wrote:
Dear Ludovic and Alex,
Please try to upgrade your copy of PALEOMIX and let me know if that fixes your problem. This particular bug should have been fixed in PALEOMIX v1.2.13, while you appear to be running v1.2.4.
Best regards, Mikkel
On Wed, Nov 28, 2018 at 2:49 AM Ludovic Dutoit notifications@github.com wrote:
Hi,
we are trying to run the latest paleomix version. Everything is installed but we cannot troubleshoot the error we get back trying to run: ''' paleomix bam_pipeline run 000_makefile.yam ''' error.log https://github.com/MikkelSchubert/paleomix/files/2622508/error.log
Basically we get a truncated bam out of BWA ( see error log and attached .stderr file).
Could you maybe help us with that? Thank you so much for your help!
Ludovic Dutoit & Alex Verry University of Otago, New Zealand
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.
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Hi,
we are trying to run the latest paleomix version. Everything is installed but we cannot troubleshoot the error we get back trying to run:
pipe_python_46912708195856.stderr.txt
error.log
Basically we get a truncated bam out of BWA ( see error log and attached .stderr file).
Could you maybe help us with that? Thank you so much for your help!
Ludovic Dutoit & Alex Verry University of Otago, New Zealand