Paleomix bam_pipeline error

MikkelSchubert / paleomix

Pipelines and tools for the processing of ancient and modern HTS data.

https://paleomix.readthedocs.io/en/stable/

MIT License

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Paleomix bam_pipeline error #21

Closed nsmt89 closed 5 years ago

nsmt89 commented 5 years ago

paleomix_eg Hi, I tried to run paleomix using bam_pipeline and I got this error (refer to attached image), could you help me troubleshoot what is the problem? Thank you.

MikkelSchubert commented 5 years ago

You haven't installed Picard and GATK in the expected location.

Please see the documentation for instructions on how to install the pipeline requirements: https://paleomix.readthedocs.io/en/latest/bam_pipeline/requirements.html