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MikkelSchubert / paleomix

Pipelines and tools for the processing of ancient and modern HTS data.
https://paleomix.readthedocs.io/en/stable/
MIT License
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Alignment to sequence variation graph? #29

Open nwales opened 4 years ago

nwales commented 4 years ago

Rui Martiniano and others have shown that mapping aDNA reads to a variation graph can substantially reduce reference bias. It would be great if vg could be included as a mapping option!

Cheers, Nathan

MikkelSchubert commented 4 years ago

Hi Nathan,

Thank you for the suggestion. The addition of support for variant graph mapping is planned, but I cannot say when it will be added.

Cheers

On Thu, 2 Apr 2020 at 20:18, Nathan Wales notifications@github.com wrote:

Rui Martiniano and others https://www.biorxiv.org/content/10.1101/782755v1 have shown that mapping aDNA reads to a variation graph can substantially reduce reference bias. It would be great if vg could be included as a mapping option!

Cheers, Nathan

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