Java issue with an updated openjdk version

[flaviode]

Hi, I run BAM pipeline but it returns:

Building BAM pipeline ...

• Validating prefixes ... Running BAM pipeline ...
• Checking file dependencies ...
• Checking for required executables ...

• Checking version requirements ...

  • Checking version of 'JAVA Runtime Environment' ... Program may be broken or a version not supported by the pipeline; please refer to the PALEOMIX documentation.

  Required: at least v1.6.x Search string: 'java version "(\d+)\._' ---------------------- Command output ---------------------- openjdk version "1.8.0_252" OpenJDK Runtime Environment (build 1.8.0_252-8u252-b09-1~16.04-b09) OpenJDK 64-Bit Server VM (build 25.252-b09, mixed mode)

I guess this version is updated: how can I figure out this issue, without changing the openjdk version?

Thanks

[MikkelSchubert]

Hi,

You appear to be using a version of PALEOMIX that is very, very old: The particular issue you are running into was fixed four years ago, and the version check was then completely removed two years ago because of related issues. So upgrading to a newer version of PALEOMIX (e.g. v1.2.14) should fix it. If it doesn't, then feel free to open another issue.

Best, Mikkel