MingyuYang-Yale / DBiT-seq

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About Spatial plot of single gene ! #6

Open 10KGenomics opened 2 years ago

10KGenomics commented 2 years ago

Dear sir

I'm running data_ plotter.py script, the instructions are as follows:

data plotter. py --counts ./Sample Tr.tsv --xlim 50 --ylim 50 --show-genes Penk

Because the script defaults to the X axis limits to have equally sized sub images (default: [1, 33]) and the Y axis limits to have equally sized sub images (default: [1, 35]).

My spot size is 50 μ M (50 / 50 = 2500 spots), the error is as follows: image How do I optimize code? In addition, it seems that the TSV file of a single gene can be provided when running the st_qa-new.py script, and the single gene space plot I want can be obtained