snp_matrix and polyploid vcf

MinzhuXie / H-PoPG

H-PoP and H-PoPG: Heuristic Partitioning Algorithms for Single Individual Haplotyping of Polyploids

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Closed habibr closed 7 years ago

habibr commented 7 years ago

Hi Minzhu,

i am interested on using your program but stumbled upon how the SNP matrix file generated. Is there any scripts or program to produce that?

And how do you produce vcf with polyploid genotypes call like 0/0/1?

MinzhuXie commented 7 years ago

The genotype is an input and provided by the vcf file.