After obtaining phased file I need to get consensus fasta sequence for each haplotype and I suppose I can do it through conversation of generated phased file information back to genotype information in vcf file according to SNP positions. How it can be done? Any suggestions?
Please see the new version H-PoPGv0.2.0.jar, which could output the detailed information about SNP positions, DNA bases of haplotypes with option "-d filename"
After obtaining phased file I need to get consensus fasta sequence for each haplotype and I suppose I can do it through conversation of generated phased file information back to genotype information in vcf file according to SNP positions. How it can be done? Any suggestions?