Closed sinamajidian closed 4 years ago
Dear H-PoPG team I've run the algorithm using following line
java -jar H-PoPG.jar -p 4 -f frag.txt -o phased.txt
One haplotype block contains lots of repeated variant:
27701 4256472 0 1 1 0 27702 4256591 0 1 0 0 27703 4256795 0 1 0 0 27704 4257106 0 1 0 0 .. 27769 4261791 0 1 0 0 27769 4261791 0 1 0 0 27769 4261791 0 1 0 0 27769 4261791 0 1 0 0 27769 4261791 0 1 0 0 27769 4261791 0 1 0 0 27769 4261791 0 1 0 0 27769 4261791 0 1 0 0 27769 4261791 0 1 0 0 27769 4261791 0 1 0 0
The number of unique variants is
cat block.txt | cut -f 1 | sort | uniq | wc -l 91
Do have any idea how I can avoid that?
Sorry my bad.
Dear H-PoPG team I've run the algorithm using following line
One haplotype block contains lots of repeated variant:
The number of unique variants is
Do have any idea how I can avoid that?