I had an error when saving the graph representation of the model at the end of training.
[2022-05-29 14:01:28,329]
Plot and save results
Traceback (most recent call last):
File "/users/caz3so/.conda/envs/maxatac_train/bin/maxatac", line 7, in <module>
exec(compile(f.read(), __file__, 'exec'))
File "/users/caz3so/repo/miraldilab/maxATAC/maxatac/bin/maxatac", line 24, in <module>
sys.exit(main(sys.argv[1:]))
File "/users/caz3so/repo/miraldilab/maxATAC/maxatac/bin/maxatac", line 20, in main
args.func(args)
File "/users/caz3so/repo/miraldilab/maxATAC/maxatac/analyses/train.py", line 143, in run_training
export_model_structure(maxatac_model.nn_model, maxatac_model.results_location)
File "/users/caz3so/repo/miraldilab/maxATAC/maxatac/utilities/plot.py", line 11, in export_model_structure
plot_model(
File "/users/caz3so/.conda/envs/maxatac_train/lib/python3.9/site-packages/keras/utils/vis_utils.py", line 421, in plot_model
dot = model_to_dot(
File "/users/caz3so/.conda/envs/maxatac_train/lib/python3.9/site-packages/keras/utils/vis_utils.py", line 163, in model_to_dot
raise ImportError(message)
ImportError: You must install pydot (`pip install pydot`) and install graphviz (see instructions at https://graphviz.gitlab.io/download/) for plot_model/model_to_dot to work.
We need to add instructions to the readme on how to make sure graphviz is installed.
I had an error when saving the graph representation of the model at the end of training.
We need to add instructions to the readme on how to make sure graphviz is installed.