These updates involve updates to documentation, the ROI pool generator, and the function for getting the target input matrix. Changes to the data generator include removing hardcoded chromosome sizes and blacklists paths. There are some quality of life changes to the functions for getting target matrix. They were split into their own function for easier manipulation in later versions.
I added documentation referencing issue #100 .
The ROI pools will only be saved if you include the --save_roi flag is included. This was added to help with debugging and saving several versions of the same ROIs.
These updates involve updates to documentation, the ROI pool generator, and the function for getting the target input matrix. Changes to the data generator include removing hardcoded chromosome sizes and blacklists paths. There are some quality of life changes to the functions for getting target matrix. They were split into their own function for easier manipulation in later versions.
I added documentation referencing issue #100 .
The ROI pools will only be saved if you include the
--save_roiflag is included. This was added to help with debugging and saving several versions of the same ROIs.