Fixed issue regarding plotting of PR curves via maxATAC benchmark(). Previously, a "--skip_plot" option was set by default to TRUE, so the maxATAC benchmark function would not output a P-R curve. This option has now been changed to the --plot or -plot option. When this option is included as part of a call to maxATAC benchmark(), an output PR curve will now be generated. An example plot is attached.
Fixed issue regarding plotting of PR curves via maxATAC benchmark(). Previously, a "--skip_plot" option was set by default to TRUE, so the maxATAC benchmark function would not output a P-R curve. This option has now been changed to the --plot or -plot option. When this option is included as part of a call to maxATAC benchmark(), an output PR curve will now be generated. An example plot is attached.