MiraldiLab / maxATAC

Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
Apache License 2.0
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#97 Update prepare function for scATAC-seq #99

Closed tacazares closed 2 years ago

tacazares commented 2 years ago

Update code for preparing scATAC-seq fragment files related to #97 . There was an issue where the fragments files could not be read in as a dataframe. I am not sure what caused this to be an issue now when we have used this function previously. I added code to import the dataframe that seemed to work. This needs to be tested with another fragment file and validated that it works.