Mishima-syk / psikit

psi4+RDKit
BSD 3-Clause "New" or "Revised" License
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dihedral/torsion scan #42

Open btatsis opened 2 years ago

btatsis commented 2 years ago

Hello,

Is it possible to perform a geometry minimization while constraining a dihedral angle? That would be super helpful for a dihedral/torsion scan?

For example: http://forum.psicode.org/t/how-to-setup-a-dihedral-scan/78

Thanks, Bill

iwatobipen commented 2 years ago

Hi Bill, Will it be help for you? https://github.com/Mishima-syk/psikit/blob/master/examples/Torsion_scan/torsional_scan.ipynb

Thanks, Taka

btatsis commented 2 years ago

Hi Taka,

Thanks for forwarding me the nb.

Unfortunately, in the nb there isn't a constrain optimization step (if I am correct). Dihedral angle is set to an incremented value and energy is calculated. I would like to perform a geom. optim. in each dihedral angle value increment (if it is possible).

Best, Bill