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Missouri-BMI / OMOP_ON_P_CDM

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Run OHDSI script on MUHC OMOP data #52

Open vyshu1094 opened 6 months ago

vyshu1094 commented 6 months ago

@vasanthi014 FYI

vasanthi014 commented 6 months ago

https://www.pnas.org/doi/10.1073/pnas.1510502113 This is the paper Russ was referring to, for running a OHDSI OMOP script on MU OMOP data.

There is R code here https://github.com/OHDSI/StudyProtocols/tree/master/Study%201%20-%20Treatment%20Pathways

There is discussion thread on ohdsi forums on R and SQL options to execute the analysis https://www.pnas.org/doi/10.1073/pnas.1510502113

vasanthi014 commented 6 months ago

@spinkac You should have access to OMOPCDM.CDM using ANALYTICS role. All the views with DEID are deid views are the views with no prefix are limited views.

fyi @sxinger

sxinger commented 6 months ago

@vasanthi014 can you give the same access to Hamza @turabieh? He will be helping me develop sql codes to identify ALS patients using OMOP: https://github.com/gpcnetwork/cdc-als4m-mu/issues/1

vasanthi014 commented 5 months ago

@spinkac Did you get a chance to work on this? Please let me know if you run into issues with OMOP data.