search

Mizzou-CBMI / COSMOS2

Python Scientific Pipeline Management System
GNU General Public License v3.0
71 stars 39 forks source link

tools and variable #49

Closed aurelBZH closed 8 years ago

aurelBZH commented 8 years ago

Is the possible to put the result of the system command of a tool in a variable instead of in a file ?

egafni commented 8 years ago

Cosmos is designed for distributed computing with, and so there's not really any shared state between Tasks unfortunately. There are some hacky things you could do here, but it's almost certainly just worth your time to just deal with the boiler plate of reading/writing the result to a file