Closed sigveka closed 8 years ago
Why?
-INPUT = src \
/home/sigveka/Documents/2015/Projects/MoDeNa/MoDeNa_GitHub/examples \
/home/sigveka/Documents/2015/Projects/MoDeNa/MoDeNa_GitHub/applications \
/home/sigveka/Documents/2015/Projects/MoDeNa/MoDeNa_GitHub/doc \
On 30/12/15 03:09, Sigve Karolius wrote:
This is a scary large commit, but everything but two things should be working (see "Problems").
Changes
The main changes have happened in five files:
Documentation:
- Strategy.py
- SurrogateModels.py
"ExactTask" AND "Backward Mapping Model" changes:
- PolymerDensity.py
- Solubility.py
- SurfaceTension.py
Problems
- I am getting a strange error when running |Solubility/ExampleOfUsage/workflow|
|Loading model Solubility[A=CO2,B=HEXANE] failed - Attempting automatic initialisation modena.Strategy.ParametersNotValid: ('Surrogate model does not have valid parameters', <BackwardMappingModel: BackwardMappingModel object>) Error in python catched in 226 of /home/sigveka/Documents/Projects/MoDeNa/GitHub/MoDeNa/src/src/model.c /home/sigveka/lib/modena/libmodena.so.1(modena_print_backtrace+0x2b) [0x7fd6cb50929b] /home/sigveka/lib/modena/libmodena.so.1(modena_model_new+0x123) [0x7fd6cb508803] ../src/MacroscopicProblem(main+0x18) [0x400c68] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0) [0x7fd6cae4ca40] ../src/MacroscopicProblem(_start+0x29) [0x400df9] return code = 1 An unknow error occurred Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/fireworks/core/rocket.py", line 211, in run m_action = t.run_task(my_spec) File "/home/sigveka/lib/python2.7/site-packages/modena/Strategy.py", line 1040, in run_task self.task(fw_spec) File "/home/sigveka/lib/python2.7/site-packages/modena/Strategy.py", line 1096, in task self.handleReturnCode(ret.stored_data['returncode']) File "/home/sigveka/lib/python2.7/site-packages/modena/Strategy.py", line 1079, in handleReturnCode sys.exit(returnCode) SystemExit: 1 2015-12-30 02:21:22,631 INFO Rocket finished |
- SurfaceTension: installing PETSc, the same as above.
You can view, comment on, or merge this pull request online at:
https://github.com/MoDeNa-EUProject/MoDeNa/pull/59
Commit Summary
- Initial commit into gh-pages branch (orphaned)
- "First gh-pages commit"
- "Adding index"
- "Index"
- Merge branch 'gh-pages' of https://github.com/sigveka/MoDeNa into gh-pages
- "asdf"
- "Added bibliography"
- asdf
- "'tmp' backup"
- "Python stub capable of doing 80% conversion from LaTeX, syntax is
- Merge pull request #14 from sigveka/gh-pages
- Merge remote-tracking branch 'upstream/master' into nextRelease
- partial commit
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Fix merge request
- Stash my commit
- Fixing merge error 'workflowdummy'
- Merge remote-tracking branch 'upstream/gh-pages' into nextRelease
- Fixing merge error 'SurrogateModel.py'
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- added find_module function to init.py
- Renamed 'modena model' directories, updated READMES and removed redundant files
- Adding files
- Adding files
- Removed dir:'Content', saved locally if this was a mistake...
- Removed dir:'Content', saved locally if this was a mistake...
- Starting documentation
- Partial commit
- fixing merge error
- Adding file
- Added some documentation, and 'import modena' to foamAgeing. No longer necessary to add PYTHONPATH to models directory
- Documentation
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Polymer density exact task modification
- Merge error in Readme.md from examples/twoTanksFortran
- Edited function for locating 'MoDeNaModels' in 'src/python/init.py'
Added documentation ++. Two problems: 1. Solubility 2. SurfaceTension
File Changes
- D applications/PUfoam/Kinetics/.gitignore https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-0 (1)
- D applications/PUfoam/Kinetics/initModels https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-1 (60)
- D applications/PUfoam/Kinetics/src/.gitignore https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-2 (21)
- D applications/PUfoam/Kinetics/src/CMakeLists.txt https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-3 (30)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/ioutils.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-4 (45)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/main.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-5 (10)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/model.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-6 (408)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/opkda1.f https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-7 (10136)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/opkda2.f https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-8 (1441)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/opkdmain.f https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-9 (16587)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/.gitignore https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-10 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/QmomKinetics.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-11 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/README.md https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-12 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/init.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-13 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/CMakeLists.txt https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-14 (0)
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- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/QmomKinetics.cpp https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-17 (0)
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- R applications/PUfoam/MoDeNaModels/foamConductivity/init.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-256 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/foamConductivity.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-257 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/CMakeLists.txt https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-258 (2)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/besselj.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-259 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/bessely.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-260 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/complex.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-261 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/condrad.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-262 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/conduction.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-263 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/constants.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-264 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/cylprop.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-265 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/filmprop.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-266 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/foamgeom.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-267 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/foamprop.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-268 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/gasprop.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-269 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/hbrd.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-270 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/interpolation.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-271 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/ioutils.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-272 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/main.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-273 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/physicalProperties.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-274 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/quadpack.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-275 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/solidprop.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-276 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/specfun.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-277 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/tests.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-278 (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/utilit.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-279 (0)
- R applications/PUfoam/MoDeNaModels/gasConductivity/init.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-280 (0)
- R applications/PUfoam/MoDeNaModels/gasConductivity/gasConductivity.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-281 (0)
- R applications/PUfoam/MoDeNaModels/gasMixtureConductivity/init.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-282 (0)
- R applications/PUfoam/MoDeNaModels/gasMixtureConductivity/gasMixtureConductivity.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-283 (0)
- R applications/PUfoam/MoDeNaModels/polymerConductivity/init.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-284 (0)
- R applications/PUfoam/MoDeNaModels/polymerConductivity/polymerConductivity.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-285 (0)
- R applications/PUfoam/MoDeNaModels/polymerViscosity/init.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-286 (0)
- R applications/PUfoam/MoDeNaModels/polymerViscosity/polymerViscosity.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-287 (0)
- D applications/PUfoam/Models/PolymerDensity/ExampleOfUsage/modDensity.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-288 (206)
- D applications/PUfoam/Models/PolymerDensity/ExampleOfUsage/src/srcDetailedCode/Numeric_subroutines.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-289 (1667)
- D applications/PUfoam/Models/PolymerDensity/ExampleOfUsage/src/srcDetailedCode/VLE_main.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-290 (125)
- D applications/PUfoam/Models/PolymerDensity/ExampleOfUsage/src/srcDetailedCode/VLE_subroutines.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-291 (7156)
- D applications/PUfoam/Models/PolymerDensity/ExampleOfUsage/src/srcDetailedCode/getting_started_subroutines.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-292 (4097)
- D applications/PUfoam/Models/PolymerDensity/ExampleOfUsage/src/srcDetailedCode/main.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-293 (132)
- D applications/PUfoam/Models/PolymerDensity/ExampleOfUsage/src/srcDetailedCode/module_solve_nonlinear.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-294 (1645)
- D applications/PUfoam/Models/PolymerDensity/ExampleOfUsage/src/srcDetailedCode/modules.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-295 (368)
- D applications/PUfoam/Models/Solubility/ExampleOfUsage/modSolubility.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-296 (176)
- D applications/PUfoam/Models/Solubility/ExampleOfUsage/src/srcDetailedCode/Numeric_subroutines.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-297 (1667)
- D applications/PUfoam/Models/Solubility/ExampleOfUsage/src/srcDetailedCode/VLE_main.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-298 (102)
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I applications/PUfoam/Models/Solubility/ExampleOfUsage/src/srcDetailedCode/getting_started_subroutines.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-300 (0)
Patch Links:
- https://github.com/MoDeNa-EUProject/MoDeNa/pull/59.patch
- https://github.com/MoDeNa-EUProject/MoDeNa/pull/59.diff
— Reply to this email directly or view it on GitHub https://github.com/MoDeNa-EUProject/MoDeNa/pull/59.
Dr. Henrik Rusche WIKKI Ltd. Unit 459 Southbank House Tel: +44 (0)20 3176 7190 Black Prince Road E-mail: h.rusche@wikki.co.uk
www.wikki.co.uk
Sorry about that, thought I remembered to change it back.
I could not get doxygen to work unless I put in the absolute paths (didnt research why, just concluded it didnt work...)
Sigve
On 30 December 2015 at 12:22, Henrik Rusche notifications@github.com wrote:
Why?
-INPUT = src \
- examples \
- applications \
- doc \ +INPUT = /home/sigveka/Documents/2015/Projects/MoDeNa/MoDeNa_GitHub/src \ + /home/sigveka/Documents/2015/Projects/MoDeNa/MoDeNa_GitHub/examples \ + /home/sigveka/Documents/2015/Projects/MoDeNa/MoDeNa_GitHub/applications \ + /home/sigveka/Documents/2015/Projects/MoDeNa/MoDeNa_GitHub/doc \
On 30/12/15 03:09, Sigve Karolius wrote:
This is a scary large commit, but everything but two things should be working (see "Problems").
Changes
The main changes have happened in five files:
Documentation:
- Strategy.py
- SurrogateModels.py
"ExactTask" AND "Backward Mapping Model" changes:
- PolymerDensity.py
- Solubility.py
- SurfaceTension.py
Problems
- I am getting a strange error when running |Solubility/ExampleOfUsage/workflow|
|Loading model Solubility[A=CO2,B=HEXANE] failed - Attempting automatic initialisation modena.Strategy.ParametersNotValid: ('Surrogate model does not have valid parameters', <BackwardMappingModel: BackwardMappingModel object>) Error in python catched in 226 of /home/sigveka/Documents/Projects/MoDeNa/GitHub/MoDeNa/src/src/model.c /home/sigveka/lib/modena/libmodena.so.1(modena_print_backtrace+0x2b) [0x7fd6cb50929b] /home/sigveka/lib/modena/libmodena.so.1(modena_model_new+0x123) [0x7fd6cb508803] ../src/MacroscopicProblem(main+0x18) [0x400c68] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0) [0x7fd6cae4ca40] ../src/MacroscopicProblem(_start+0x29) [0x400df9] return code = 1 An unknow error occurred Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/fireworks/core/rocket.py", line 211, in run m_action = t.run_task(my_spec) File "/home/sigveka/lib/python2.7/site-packages/modena/Strategy.py", line 1040, in run_task self.task(fw_spec) File "/home/sigveka/lib/python2.7/site-packages/modena/Strategy.py", line 1096, in task self.handleReturnCode(ret.stored_data['returncode']) File "/home/sigveka/lib/python2.7/site-packages/modena/Strategy.py", line 1079, in handleReturnCode sys.exit(returnCode) SystemExit: 1 2015-12-30 02:21:22,631 INFO Rocket finished |
- SurfaceTension: installing PETSc, the same as above.
You can view, comment on, or merge this pull request online at:
https://github.com/MoDeNa-EUProject/MoDeNa/pull/59
Commit Summary
- Initial commit into gh-pages branch (orphaned)
- "First gh-pages commit"
- "Adding index"
- "Index"
- Merge branch 'gh-pages' of https://github.com/sigveka/MoDeNa into gh-pages
- "asdf"
- "Added bibliography"
- asdf
- "'tmp' backup"
- "Python stub capable of doing 80% conversion from LaTeX, syntax is
- Merge pull request #14 from sigveka/gh-pages
- Merge remote-tracking branch 'upstream/master' into nextRelease
- partial commit
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Fix merge request
- Stash my commit
- Fixing merge error 'workflowdummy'
- Merge remote-tracking branch 'upstream/gh-pages' into nextRelease
- Fixing merge error 'SurrogateModel.py'
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- added find_module function to init.py
- Renamed 'modena model' directories, updated READMES and removed redundant files
- Adding files
- Adding files
- Removed dir:'Content', saved locally if this was a mistake...
- Removed dir:'Content', saved locally if this was a mistake...
- Starting documentation
- Partial commit
- fixing merge error
- Adding file
- Added some documentation, and 'import modena' to foamAgeing. No longer necessary to add PYTHONPATH to models directory
- Documentation
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Polymer density exact task modification
- Merge error in Readme.md from examples/twoTanksFortran
- Edited function for locating 'MoDeNaModels' in 'src/python/init.py'
- Added documentation ++. Two problems: 1. Solubility 2. SurfaceTension
File Changes
- D applications/PUfoam/Kinetics/.gitignore https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-0 (1)
- D applications/PUfoam/Kinetics/initModels https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-1 (60)
- D applications/PUfoam/Kinetics/src/.gitignore https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-2 (21)
- D applications/PUfoam/Kinetics/src/CMakeLists.txt https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-3 (30)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/ioutils.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-4 (45)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/main.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-5 (10)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/model.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-6 (408)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/opkda1.f https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-7 (10136)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/opkda2.f https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-8 (1441)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/opkdmain.f https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-9 (16587)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/.gitignore https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-10 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/QmomKinetics.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-11 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/README.md https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-12 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/init.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-13 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/CMakeLists.txt https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-14 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/HankelHadamard.h https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-15 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/McGrawCorrection.h < https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-16> (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/QmomKinetics.cpp https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-17 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/WrightCorrection.h < https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-18> (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/bubbleRadius.h https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-19 (0)
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- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/determinant.h https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-21 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/differenceTable.h https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-22 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/eigen/CMakeLists.txt https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-23 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/eigen/src/dcopy.f https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-24 (0)
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Patch Links:
- https://github.com/MoDeNa-EUProject/MoDeNa/pull/59.patch
- https://github.com/MoDeNa-EUProject/MoDeNa/pull/59.diff
— Reply to this email directly or view it on GitHub https://github.com/MoDeNa-EUProject/MoDeNa/pull/59.
Dr. Henrik Rusche WIKKI Ltd. Unit 459 Southbank House Tel: +44 (0)20 3176 7190 Black Prince Road E-mail: h.rusche@wikki.co.uk
London SE1 7SJ, United Kingdom
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— Reply to this email directly or view it on GitHub https://github.com/MoDeNa-EUProject/MoDeNa/pull/59#issuecomment-167981627 .
Easy, simply run
doxygen doc/Doxyfile
from root directory
Henrik
On 30/12/15 15:55, Sigve Karolius wrote:
Sorry about that, thought I remembered to change it back.
I could not get doxygen to work unless I put in the absolute paths (didnt research why, just concluded it didnt work...)
Sigve
On 30 December 2015 at 12:22, Henrik Rusche notifications@github.com wrote:
Why?
-INPUT = src \
- examples \
- applications \
- doc \ +INPUT = /home/sigveka/Documents/2015/Projects/MoDeNa/MoDeNa_GitHub/src \ + /home/sigveka/Documents/2015/Projects/MoDeNa/MoDeNa_GitHub/examples \ +
/home/sigveka/Documents/2015/Projects/MoDeNa/MoDeNa_GitHub/applications \ + /home/sigveka/Documents/2015/Projects/MoDeNa/MoDeNa_GitHub/doc \
On 30/12/15 03:09, Sigve Karolius wrote:
This is a scary large commit, but everything but two things should be working (see "Problems").
Changes
The main changes have happened in five files:
Documentation:
- Strategy.py
- SurrogateModels.py
"ExactTask" AND "Backward Mapping Model" changes:
- PolymerDensity.py
- Solubility.py
- SurfaceTension.py
Problems
- I am getting a strange error when running |Solubility/ExampleOfUsage/workflow|
|Loading model Solubility[A=CO2,B=HEXANE] failed - Attempting automatic initialisation modena.Strategy.ParametersNotValid: ('Surrogate model does not have valid parameters', <BackwardMappingModel: BackwardMappingModel object>) Error in python catched in 226 of /home/sigveka/Documents/Projects/MoDeNa/GitHub/MoDeNa/src/src/model.c /home/sigveka/lib/modena/libmodena.so.1(modena_print_backtrace+0x2b) [0x7fd6cb50929b] /home/sigveka/lib/modena/libmodena.so.1(modena_model_new+0x123) [0x7fd6cb508803] ../src/MacroscopicProblem(main+0x18) [0x400c68] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0) [0x7fd6cae4ca40] ../src/MacroscopicProblem(_start+0x29) [0x400df9] return code = 1 An unknow error occurred Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/fireworks/core/rocket.py", line 211, in run m_action = t.run_task(my_spec) File "/home/sigveka/lib/python2.7/site-packages/modena/Strategy.py", line 1040, in run_task self.task(fw_spec) File "/home/sigveka/lib/python2.7/site-packages/modena/Strategy.py", line 1096, in task self.handleReturnCode(ret.stored_data['returncode']) File "/home/sigveka/lib/python2.7/site-packages/modena/Strategy.py", line 1079, in handleReturnCode sys.exit(returnCode) SystemExit: 1 2015-12-30 02:21:22,631 INFO Rocket finished |
- SurfaceTension: installing PETSc, the same as above.
You can view, comment on, or merge this pull request online at:
https://github.com/MoDeNa-EUProject/MoDeNa/pull/59
Commit Summary
- Initial commit into gh-pages branch (orphaned)
- "First gh-pages commit"
- "Adding index"
- "Index"
- Merge branch 'gh-pages' of https://github.com/sigveka/MoDeNa into gh-pages
- "asdf"
- "Added bibliography"
- asdf
- "'tmp' backup"
- "Python stub capable of doing 80% conversion from LaTeX, syntax is
- Merge pull request #14 from sigveka/gh-pages
- Merge remote-tracking branch 'upstream/master' into nextRelease
- partial commit
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Fix merge request
- Stash my commit
- Fixing merge error 'workflowdummy'
- Merge remote-tracking branch 'upstream/gh-pages' into nextRelease
- Fixing merge error 'SurrogateModel.py'
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- added find_module function to init.py
- Renamed 'modena model' directories, updated READMES and removed redundant files
- Adding files
- Adding files
- Removed dir:'Content', saved locally if this was a mistake...
- Removed dir:'Content', saved locally if this was a mistake...
- Starting documentation
- Partial commit
- fixing merge error
- Adding file
- Added some documentation, and 'import modena' to foamAgeing. No longer necessary to add PYTHONPATH to models directory
- Documentation
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Polymer density exact task modification
- Merge error in Readme.md from examples/twoTanksFortran
- Edited function for locating 'MoDeNaModels' in 'src/python/init.py'
- Added documentation ++. Two problems: 1. Solubility 2. SurfaceTension
File Changes
- D applications/PUfoam/Kinetics/.gitignore https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-0 (1)
- D applications/PUfoam/Kinetics/initModels https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-1 (60)
- D applications/PUfoam/Kinetics/src/.gitignore https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-2 (21)
- D applications/PUfoam/Kinetics/src/CMakeLists.txt https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-3 (30)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/ioutils.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-4 (45)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/main.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-5 (10)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/model.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-6 (408)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/opkda1.f https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-7 (10136)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/opkda2.f https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-8 (1441)
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- R
applications/PUfoam/MoDeNaModels/foamConductivity/src/src/solidprop.f90
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- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/specfun.f90
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- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/tests.f90 < https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-278> (0)
- R applications/PUfoam/MoDeNaModels/foamConductivity/src/src/utilit.f90
https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-279 (0)
- R applications/PUfoam/MoDeNaModels/gasConductivity/init.py
https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-280 (0)
- R applications/PUfoam/MoDeNaModels/gasConductivity/gasConductivity.py < https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-281> (0)
- R applications/PUfoam/MoDeNaModels/gasMixtureConductivity/init.py < https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-282> (0)
- R
applications/PUfoam/MoDeNaModels/gasMixtureConductivity/gasMixtureConductivity.py
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- R applications/PUfoam/MoDeNaModels/polymerConductivity/init.py
https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-284 (0)
- R
applications/PUfoam/MoDeNaModels/polymerConductivity/polymerConductivity.py
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- R applications/PUfoam/MoDeNaModels/polymerViscosity/init.py
https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-286 (0)
- R applications/PUfoam/MoDeNaModels/polymerViscosity/polymerViscosity.py
https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-287 (0)
- D applications/PUfoam/Models/PolymerDensity/ExampleOfUsage/modDensity.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-288 (206)
- D
applications/PUfoam/Models/PolymerDensity/ExampleOfUsage/src/srcDetailedCode/Numeric_subroutines.f90
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- D
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- D
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- D
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- D
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- D
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- D
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- D applications/PUfoam/Models/Solubility/ExampleOfUsage/modSolubility.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-296 (176)
- D
applications/PUfoam/Models/Solubility/ExampleOfUsage/src/srcDetailedCode/Numeric_subroutines.f90
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- D
applications/PUfoam/Models/Solubility/ExampleOfUsage/src/srcDetailedCode/VLE_subroutines.f90
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- I
applications/PUfoam/Models/Solubility/ExampleOfUsage/src/srcDetailedCode/getting_started_subroutines.f90
https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-300 (0)
Patch Links:
- https://github.com/MoDeNa-EUProject/MoDeNa/pull/59.patch
- https://github.com/MoDeNa-EUProject/MoDeNa/pull/59.diff
— Reply to this email directly or view it on GitHub https://github.com/MoDeNa-EUProject/MoDeNa/pull/59.
Dr. Henrik Rusche WIKKI Ltd. Unit 459 Southbank House Tel: +44 (0)20 3176 7190 Black Prince Road E-mail: h.rusche@wikki.co.uk
London SE1 7SJ, United Kingdom
www.wikki.co.uk
— Reply to this email directly or view it on GitHub
https://github.com/MoDeNa-EUProject/MoDeNa/pull/59#issuecomment-167981627 .
— Reply to this email directly or view it on GitHub https://github.com/MoDeNa-EUProject/MoDeNa/pull/59#issuecomment-168014731.
Dr. Henrik Rusche WIKKI Gesellschaft für numerische Kontinuumsmechanik mbH Görgesstraße 24, 38118 Braunschweig, Germany
+49 531 5809439 www.wikki-gmbh.de
Haha, now I feel stupid :p
That does make sense.
Sigve
On 30 December 2015 at 16:12, Henrik Rusche notifications@github.com wrote:
Easy, simply run
doxygen doc/Doxyfile
from root directory
Henrik
On 30/12/15 15:55, Sigve Karolius wrote:
Sorry about that, thought I remembered to change it back.
I could not get doxygen to work unless I put in the absolute paths (didnt research why, just concluded it didnt work...)
Sigve
On 30 December 2015 at 12:22, Henrik Rusche notifications@github.com wrote:
Why?
-INPUT = src \
- examples \
- applications \
- doc \ +INPUT = /home/sigveka/Documents/2015/Projects/MoDeNa/MoDeNa_GitHub/src \ + /home/sigveka/Documents/2015/Projects/MoDeNa/MoDeNa_GitHub/examples \ +
/home/sigveka/Documents/2015/Projects/MoDeNa/MoDeNa_GitHub/applications \ + /home/sigveka/Documents/2015/Projects/MoDeNa/MoDeNa_GitHub/doc \
On 30/12/15 03:09, Sigve Karolius wrote:
This is a scary large commit, but everything but two things should be working (see "Problems").
Changes
The main changes have happened in five files:
Documentation:
- Strategy.py
- SurrogateModels.py
"ExactTask" AND "Backward Mapping Model" changes:
- PolymerDensity.py
- Solubility.py
- SurfaceTension.py
Problems
- I am getting a strange error when running |Solubility/ExampleOfUsage/workflow|
|Loading model Solubility[A=CO2,B=HEXANE] failed - Attempting automatic initialisation modena.Strategy.ParametersNotValid: ('Surrogate model does not have valid parameters', <BackwardMappingModel: BackwardMappingModel object>) Error in python catched in 226 of /home/sigveka/Documents/Projects/MoDeNa/GitHub/MoDeNa/src/src/model.c /home/sigveka/lib/modena/libmodena.so.1(modena_print_backtrace+0x2b) [0x7fd6cb50929b] /home/sigveka/lib/modena/libmodena.so.1(modena_model_new+0x123) [0x7fd6cb508803] ../src/MacroscopicProblem(main+0x18) [0x400c68] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0) [0x7fd6cae4ca40] ../src/MacroscopicProblem(_start+0x29) [0x400df9] return code = 1 An unknow error occurred Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/fireworks/core/rocket.py", line 211, in run m_action = t.run_task(my_spec) File "/home/sigveka/lib/python2.7/site-packages/modena/Strategy.py", line 1040, in run_task self.task(fw_spec) File "/home/sigveka/lib/python2.7/site-packages/modena/Strategy.py", line 1096, in task self.handleReturnCode(ret.stored_data['returncode']) File "/home/sigveka/lib/python2.7/site-packages/modena/Strategy.py", line 1079, in handleReturnCode sys.exit(returnCode) SystemExit: 1 2015-12-30 02:21:22,631 INFO Rocket finished |
- SurfaceTension: installing PETSc, the same as above.
You can view, comment on, or merge this pull request online at:
https://github.com/MoDeNa-EUProject/MoDeNa/pull/59
Commit Summary
- Initial commit into gh-pages branch (orphaned)
- "First gh-pages commit"
- "Adding index"
- "Index"
- Merge branch 'gh-pages' of https://github.com/sigveka/MoDeNa into gh-pages
- "asdf"
- "Added bibliography"
- asdf
- "'tmp' backup"
- "Python stub capable of doing 80% conversion from LaTeX, syntax is
- Merge pull request #14 from sigveka/gh-pages
- Merge remote-tracking branch 'upstream/master' into nextRelease
- partial commit
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Fix merge request
- Stash my commit
- Fixing merge error 'workflowdummy'
- Merge remote-tracking branch 'upstream/gh-pages' into nextRelease
- Fixing merge error 'SurrogateModel.py'
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- added find_module function to init.py
- Renamed 'modena model' directories, updated READMES and removed redundant files
- Adding files
- Adding files
- Removed dir:'Content', saved locally if this was a mistake...
- Removed dir:'Content', saved locally if this was a mistake...
- Starting documentation
- Partial commit
- fixing merge error
- Adding file
- Added some documentation, and 'import modena' to foamAgeing. No longer necessary to add PYTHONPATH to models directory
- Documentation
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Merge remote-tracking branch 'upstream/nextRelease' into nextRelease
- Polymer density exact task modification
- Merge error in Readme.md from examples/twoTanksFortran
- Edited function for locating 'MoDeNaModels' in 'src/python/init.py'
- Added documentation ++. Two problems: 1. Solubility 2. SurfaceTension
File Changes
- D applications/PUfoam/Kinetics/.gitignore https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-0 (1)
- D applications/PUfoam/Kinetics/initModels https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-1 (60)
- D applications/PUfoam/Kinetics/src/.gitignore https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-2 (21)
- D applications/PUfoam/Kinetics/src/CMakeLists.txt https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-3 (30)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/ioutils.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-4 (45)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/main.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-5 (10)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/model.f90 https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-6 (408)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/opkda1.f https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-7 (10136)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/opkda2.f https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-8 (1441)
- D applications/PUfoam/Kinetics/src/simpleKinetics_src/opkdmain.f https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-9 (16587)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/.gitignore https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-10 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/QmomKinetics.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-11 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/README.md https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-12 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/init.py https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-13 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/CMakeLists.txt https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-14 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/HankelHadamard.h https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-15 (0)
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- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/QmomKinetics.cpp https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-17 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/WrightCorrection.h < https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-18> (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/bubbleRadius.h https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-19 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/coalescence.h https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-20 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/determinant.h https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-21 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/differenceTable.h https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-22 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/eigen/CMakeLists.txt https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-23 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/eigen/src/dcopy.f https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-24 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/eigen/src/dgemm.f https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-25 (0)
- R applications/PUfoam/MoDeNaModels/CFD_tool_0D/src/eigen/src/dger.f https://github.com/MoDeNa-EUProject/MoDeNa/pull/59/files#diff-26 (0)
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Patch Links:
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- https://github.com/MoDeNa-EUProject/MoDeNa/pull/59.diff
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This is a scary large commit, but everything but two things should be working (see "Problems").
Changes
The main changes have happened in five files:
Documentation:
"ExactTask" AND "Backward Mapping Model" changes:
Problems
Solubility/ExampleOfUsage/workflow