Open bcjaeger opened 1 month ago
Thanks a lot @bcjaeger
Sounds good to me. I propose that you outline what you envision, let's review it, polish it, and move forward.
Btw, let's start from version 0.9.4 (released today)
Sounds great, and congrats on the release!
Sorry for the delay following up! Here is a first draft. The function titles will be left as-is, so I didn't include them here.
Use standardized colors from the MoTrPAC consortium.
group_cols
sex_cols
tissue_cols
Use standardized abbreviations from the MoTrPAC consortium.
group_abbr
sex_abbr
tissue_abbr
Dictionaries and code lists for MoTrPAC data
bic_animal_tissue_code
assay_codes
metabolomics_data_dictionary
metadata
Checks/validations to assert that different objects follow expectations
check
validate
Load and write batch data from files
load
write
Create basic charts for quality control
plot
proteomics_plots_rii
Helpers and stand-alone functions for quality control
Do you think these groups make sense?
Hello! I was reviewing the outstanding docs in the
pkgdown
website and I noticed many functions in the reference page (https://motrpac.github.io/MotrpacBicQC/reference/index.html) could be grouped (e.g., all the functions that start withcheck_
).Would it be helpful to organize the functions into groups and annotate the groups with high-level descriptions, similar to the organization shown here: https://docs.ropensci.org/aorsf/reference/index.html?
If yes, I'd love to initiate a PR and modify based on your feedback. This would be a great way for me to get more familiar with all the functions in the package and what they do. 😀