A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations (oriented towards molecular dynamics (MD)), providing some training itself and linking out to other helpful information elsewhere. The intent is that this provide information on the prerequisites which will be required for understanding/following many of the other "best practices" documents being prepared.
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But generally, the autocorrelation time isn't known beforehand. #107
https://github.com/MobleyLab/basic_simulation_training/blob/924ee8724dca2462c12f6f1dbc287b5f1007460e/paper/basic_training.tex#L695
Should address that the autocorrelation time isn't known beforehand. Which may just be that you know the autocorrelation time for similar systems.