The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installation instructions and full feature documentation.
Again, this is based on the contents of the reaction equation, quite simply, I think it'll be useful that I can ask a reaction whether or not it contains a compound.
If this is implemented, then we can have a FIGMODEL::reactionsWithCompound(cpdxxxxx,boolean) function that will return the list of reactions that contain the compound, and (if the boolean is used) a list of transporters that contain the compound.
Again, this is based on the contents of the reaction equation, quite simply, I think it'll be useful that I can ask a reaction whether or not it contains a compound.
If this is implemented, then we can have a FIGMODEL::reactionsWithCompound(cpdxxxxx,boolean) function that will return the list of reactions that contain the compound, and (if the boolean is used) a list of transporters that contain the compound.