mdl-createmodel timing out

[jamesclulow]

Ran the following command to get this today.

./mdl-createmodel -genome Seed314266.4 -overwrite 1mdlcreatemodel

2012-02-28 13:09:40: Request failed with code=500 msg=read timeout, sleeping 1 and retrying 2012-02-28 13:29:41: Request failed with code=500 msg=read timeout, sleeping 2 and retrying

Whoops! We encountered an unrecoverable error.

View error using the "ms-lasterror" command.

Have you updated recently? ( git pull ) Have you changed your configuration? ( ms-config )

If you are still having problems, please submit a ticket copying the contents of the error file printed above to:

https://github.com/ModelSEED/Model-SEED-core/issues/new

Thanks!

dmf-46-152:bin jamesclulow$ ./ms-lasterror mslasterror Last error printed to file:

/Users/jamesclulow/Desktop/Model-SEED-core/.errors/error-RmgWd

Error text printed below:

ModelDriver encountered an unrecoverable error:

500 Can't connect to pubseed.theseed.org:80 (Operation timed out) at /Users/jamesclulow/Desktop/Model-SEED-core/lib/myRAST/ClientThing.pm line 729
    ClientThing::_send_request('SAPserver=HASH(0x7feebc62cc40)', 'function', 'methods', 'args', '--- []\x{a}', 'source', 'ClientThing', 'encoding', 'yaml2', ...) called at /Users/jamesclulow/Desktop/Model-SEED-core/lib/myRAST/ClientThing.pm line 481
    ClientThing::_call_method('SAPserver=HASH(0x7feebc62cc40)', 'methods', 'ARRAY(0x7feebc6e3fe0)') called at /Users/jamesclulow/Desktop/Model-SEED-core/lib/myRAST/ClientThing.pm line 185
    ClientThing::new('SAPserver', 'SAP', 'url', 'http://pubseed.theseed.org/sapling/server.cgi') called at /Users/jamesclulow/Desktop/Model-SEED-core/lib/myRAST/SAPserver.pm line 72
    SAPserver::new('SAPserver') called at /Users/jamesclulow/Desktop/Model-SEED-core/lib/ModelSEED/FIGMODEL.pm line 666
    ModelSEED::FIGMODEL::sapSvr('ModelSEED::FIGMODEL=HASH(0x7feebc5d9f10)') called at /Users/jamesclulow/Desktop/Model-SEED-core/lib/ModelSEED/FIGMODEL/FIGMODELmodel.pm line 208
    ModelSEED::FIGMODEL::FIGMODELmodel::initializeModel('ModelSEED::FIGMODEL::FIGMODELmodel=HASH(0x7feebc6433a8)', 'HASH(0x7feebc66c810)') called at /Users/jamesclulow/Desktop/Model-SEED-core/lib/ModelSEED/FIGMODEL/FIGMODELmodel.pm line 34
    ModelSEED::FIGMODEL::FIGMODELmodel::new('ModelSEED::FIGMODEL::FIGMODELmodel', 'HASH(0x7feebc60cac8)') called at /Users/jamesclulow/Desktop/Model-SEED-core/lib/ModelSEED/FIGMODEL.pm line 4062
    ModelSEED::FIGMODEL::create_model('ModelSEED::FIGMODEL=HASH(0x7feebc5d9f10)', 'HASH(0x7feebc66c810)') called at /Users/jamesclulow/Desktop/Model-SEED-core/lib/ModelSEED/ModelDriver.pm line 1853
    ModelSEED::ModelDriver::mdlcreatemodel('ModelSEED::ModelDriver=HASH(0x7feebc5d9dd8)', 'mdlcreatemodel', 'HASH(0x7feebc62be48)') called at /Users/jamesclulow/Desktop/Model-SEED-core/lib/ModelSEED/ModelDriver.pl line 131
    main::__ANON__() called at /Library/Perl/5.12/Try/Tiny.pm line 76
    eval {...} called at /Library/Perl/5.12/Try/Tiny.pm line 67
    Try::Tiny::try('CODE(0x7feebc62c820)', 'Try::Tiny::Catch=REF(0x7feebc5d9d48)') called at /Users/jamesclulow/Desktop/Model-SEED-core/lib/ModelSEED/ModelDriver.pl line 135
    require /Users/jamesclulow/Desktop/Model-SEED-core/lib/ModelSEED/ModelDriver.pl called at /Users/jamesclulow/Desktop/Model-SEED-core/config//ModelSEEDbootstrap.pm line 23
    main::run() called at -e line 3

Model-SEED-core revision: cd02b23ea3e83e7321e52fa0f0ba1d4f3702919c

It seems that it cannot connect to the server?

[devoid]

Sent an email to the folks who maintain the pubseed.theseed.org.

[devoid]

It looks like the pubseed servers were down for a while this morning, but are back up now. I am preemptively closing this issue; please reopen it if you are still encountering this bug.