Closed samseaver closed 12 years ago
fba-checkgrowth has started to tell me that I cannot grow compounds which are not even in my biomass.
In this instance, I have a simple biomass of three lignin components:
(0.01) cpd00458 + (0.01) cpd01554 + (0.01) cpd01722 <=> cpd11416
and fba-checkgrowth tells me I cannot produce cpd00202...(!)
This compound is found in MFAOutput/MetaboliteProduction.txt, and yet, shouldn't even make it in there, what gives?
You may observe the files involved at:
/vol/model-dev/MODEL_DEV_DB/ReactionDB/MFAToolkitOutputFiles/2664872
This issue was solved.
samseaver
commented
12 years ago
fba-checkgrowth has started to tell me that I cannot grow compounds which are not even in my biomass.
In this instance, I have a simple biomass of three lignin components:
(0.01) cpd00458 + (0.01) cpd01554 + (0.01) cpd01722 <=> cpd11416
and fba-checkgrowth tells me I cannot produce cpd00202...(!)
This compound is found in MFAOutput/MetaboliteProduction.txt, and yet, shouldn't even make it in there, what gives?
You may observe the files involved at:
/vol/model-dev/MODEL_DEV_DB/ReactionDB/MFAToolkitOutputFiles/2664872