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ModelSEED / Model-SEED-core

The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installation instructions and full feature documentation.
http://bionet.mcs.anl.gov/index.php/Model_SEED_Homepage
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Autocompletion Failing #175

Open aabest opened 11 years ago

aabest commented 11 years ago

We are trying to run an mdl-autocomplete on a model, but the autocompletion fails. The model was loaded successfully and grows successfully on the desired media, but the autocompletion step fails using the same media.

Below is the ms-lasterror output after the failed autocompletion:

mslasterror Last error printed to file:

/Users/student/Desktop/ModelSEED/Model-SEED-core/.errors/error-ekj8x

Error text printed below:

ModelDriver encountered an unrecoverable error:

""Gapfilling of model Seed211586.19.906 failed!"" at /Users/student/Desktop/ModelSEED/Model-SEED-core/lib/ModelSEED/utilities.pm line 103.
    ModelSEED::utilities::ERROR('Gapfilling of model Seed211586.19.906 failed!') called at /Users/student/Desktop/ModelSEED/Model-SEED-core/lib/ModelSEED/FIGMODEL/FIGMODELmodel.pm line 2089
    ModelSEED::FIGMODEL::FIGMODELmodel::completeGapfilling('ModelSEED::FIGMODEL::FIGMODELmodel=HASH(0x7f8682e4d2c8)', 'HASH(0x7f8682e50400)') called at /Users/student/Desktop/ModelSEED/Model-SEED-core/lib/ModelSEED/ModelDriver.pm line 3163
    ModelSEED::ModelDriver::mdlautocomplete('ModelSEED::ModelDriver=HASH(0x7f8680802eb8)', 'mdlautocomplete', 'Seed211586.19.906', 'MR1Anaerobic', 1) called at /Users/student/Desktop/ModelSEED/Model-SEED-core/lib/ModelSEED/ModelDriver.pm line 134
    ModelSEED::ModelDriver::__ANON__() called at /Users/student/KBaseClient/local/lib/perl5/Try/Tiny.pm line 76
    eval {...} called at /Users/student/KBaseClient/local/lib/perl5/Try/Tiny.pm line 67
    Try::Tiny::try('CODE(0x7f8682e32a98)', 'Try::Tiny::Catch=REF(0x7f8682b1d4d8)') called at /Users/student/Desktop/ModelSEED/Model-SEED-core/lib/ModelSEED/ModelDriver.pm line 138
    ModelSEED::ModelDriver::run('ModelSEED::ModelDriver', 'mdlautocomplete', 'Seed211586.19.906?MR1Anaerobic?1') called at /Users/student/Desktop/ModelSEED/Model-SEED-core/bin/ModelDriver.pl line 12

Model-SEED-core revision: c40bb3ebf99fb39279d3c0bcad87dfe68bd24b9e