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ModelSEED / Model-SEED-core

The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installation instructions and full feature documentation.
http://bionet.mcs.anl.gov/index.php/Model_SEED_Homepage
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Install Error about MFATOOLKIT in Mac OS 10.7 #176

Open byji opened 10 years ago

byji commented 10 years ago

When I configure the configure file,

bji@/opt/local/Model-SEED-core$ ./bin/ms-config reload ./config/mySetting.conf rm -f Source/.o Linux/mfatoolkit make: ** No rule to make target Source/driver.o', needed byMFATOOLKIT'. Stop. MFAToolkit compilation failed! Model SEED Configuration Successful! bji@dhcp-239-072/opt/local/Model-SEED-core$

It showed that the MFATOOLKIT compilation error. So how to solve it.

If it not solved, when we reconstruct the model using mdl-reconstruct, it will generate errors as following:

Creating problem directory: 1 Creating list of inactive reactions: /opt/local/Model-SEED-core/data/ReactionDB/MFAToolkitOutputFiles/1/InactiveModelReactions.txt Printing gapfilling parameters in : /opt/local/Model-SEED-core/data/ReactionDB/MFAToolkitOutputFiles/1/CompleteGapfillingParameters.txt Running runFBAStudy Using problem directory: 1 Creating the model file: /opt/local/Model-SEED-core/data/ReactionDB/MFAToolkitOutputFiles/1/Seed416276.5.1.tbl Creating biochemistry provenance files Running FBA Whoops! We encountered an unrecoverable error.

Could not find MFAToolkit executable

View error using the "ms-lasterror" command.

So how to fix it?

Thank you for help!

cshenry commented 10 years ago

Unfortunately, we are phasing out Model-SEED-core and no longer supporting it. The ModelSEED installation is being replaced by the DOE Knowledgebase.

On Jan 28, 2014, at 3:31 AM, byji notifications@github.com wrote:

When I configure the configure file,

bji@/opt/local/Model-SEED-core$ ./bin/ms-config reload ./config/mySetting.conf rm -f Source/.o Linux/mfatoolkit make: \ No rule to make target Source/driver.o', needed byMFATOOLKIT'. Stop. MFAToolkit compilation failed! Model SEED Configuration Successful! bji@dhcp-239-072/opt/local/Model-SEED-core$

It showed that the MFATOOLKIT compilation error. So how to solve it.

If it not solved, when we reconstruct the model using mdl-reconstruct, it will generate errors as following:

Creating problem directory: 1 Creating list of inactive reactions: /opt/local/Model-SEED-core/data/ReactionDB/MFAToolkitOutputFiles/1/InactiveModelReactions.txt Printing gapfilling parameters in : /opt/local/Model-SEED-core/data/ReactionDB/MFAToolkitOutputFiles/1/CompleteGapfillingParameters.txt Running runFBAStudy Using problem directory: 1 Creating the model file: /opt/local/Model-SEED-core/data/ReactionDB/MFAToolkitOutputFiles/1/Seed416276.5.1.tbl Creating biochemistry provenance files Running FBA Whoops! We encountered an unrecoverable error.

Could not find MFAToolkit executable

View error using the "ms-lasterror" command.

So how to fix it?

Thank you for help!

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