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ModelSEED / Model-SEED-core

The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installation instructions and full feature documentation.
http://bionet.mcs.anl.gov/index.php/Model_SEED_Homepage
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ClientThing attempts to contact defunct server?!? #25

Closed samseaver closed 13 years ago

samseaver commented 13 years ago

This has just come up, and I can no longer run my model imports. The error I'm getting is a "500" error returned by ClientThing because it's trying to contact:

http://bioseed.mcs.anl.gov/~chenry/FIG/CGI/FBAMODEL_server.cgi

1) I don't know why its doing this, but this cant be integral to model import 2) If you visit this website, you'll see that some perl modules have gone missing...

devoid commented 13 years ago

Sam,

Can you give me a sense as to what you're calling for your import scripts? Then I can track down the bugs for this and the other open issues.

~ Scott

On Wed, Sep 21, 2011 at 10:14 PM, samseaver < reply@reply.github.com>wrote:

This has just come up, and I can no longer run my model imports. The error I'm getting is a "500" error returned by ClientThing because it's trying to contact:

http://bioseed.mcs.anl.gov/~chenry/FIG/CGI/FBAMODEL_server.cgi

1) I don't know why its doing this, but this cant be integral to model import 2) If you visit this website, you'll see that some perl modules have gone missing...

Reply to this email directly or view it on GitHub: https://github.com/ModelSEED/Model-SEED-core/issues/25

samseaver commented 13 years ago

I'm running the importmodel function via bin/ModelDriver:

bin/ModelDriver importmodel?MetaCyc?3702.9?seaver?/Users/seaver/Documents/Projects/Model_Import_Files/

You can find some sample model files that had previously worked in:

/vol/model-dev/MODEL_DEV_DB/ReactionDB/ImportFiles/

samseaver commented 13 years ago

This issue has been fixed by Chris's latest commit so I'm closing it