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ModelSEED / Model-SEED-core

The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installation instructions and full feature documentation.
http://bionet.mcs.anl.gov/index.php/Model_SEED_Homepage
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Build issue with MFAToolkit in Bio-enviornment #33

Closed devoid closed 13 years ago

devoid commented 13 years ago

EM -c ../Source/driver.cpp; mv _.o ../Source ../Source/driver.cpp:22:24: error: MFAToolkit.h: No such file or directory ../Source/driver.cpp:124:3: warning: no newline at end of file ../Source/driver.cpp: In function 'int main(int, char__)': ../Source/driver.cpp:27: error: 'SetProgramPath' was not declared in this scope ../Source/driver.cpp:28: error: 'SetParameter' was not declared in this scope ../Source/driver.cpp:31: error: 'STATIC_INPUTFILE' was not declared in this scope ../Source/driver.cpp:31: error: 'SetInputParametersFile' was not declared in this scope ../Source/driver.cpp:32: error: 'LoadParameters' was not declared in this scope ../Source/driver.cpp:32: error: 'FAIL' was not declared in this scope ../Source/driver.cpp:35: error: 'ClearParameterDependance' was not declared in this scope ../Source/driver.cpp:36: error: 'Initialize' was not declared in this scope ../Source/driver.cpp:36: error: 'FAIL' was not declared in this scope ../Source/driver.cpp:39: error: 'LoadFIGMODELParameters' was not declared in this scope ../Source/driver.cpp:41: error: 'DriverOptions' was not declared in this scope ../Source/driver.cpp:43: error: 'vector' was not declared in this scope ../Source/driver.cpp:43: error: 'string' was not declared in this scope ../Source/driver.cpp:43: error: 'Arguments' was not declared in this scope ../Source/driver.cpp:45: error: expected ;' before 'Buff' ../Source/driver.cpp:46: error: 'Buff' was not declared in this scope ../Source/driver.cpp:48: error: 'CommandlineInterface' was not declared in this scope ../Source/driver.cpp:51: error: 'Cleanup' was not declared in this scope ../Source/driver.cpp:54: error: 'string' was not declared in this scope ../Source/driver.cpp:54: error: expected;' before 'OutputPath' ../Source/driver.cpp:55: error: 'OutputPath' was not declared in this scope ../Source/driver.cpp:56: error: 'GetParameter' was not declared in this scope ../Source/driver.cpp:58: error: 'GetDatabaseDirectory' was not declared in this scope ../Source/driver.cpp:58: error: 'system' was not declared in this scope ../Source/driver.cpp:60: error: 'GetDatabaseDirectory' was not declared in this scope ../Source/driver.cpp:60: error: 'system' was not declared in this scope ../Source/driver.cpp: In function 'void DriverOptions()': ../Source/driver.cpp:69: error: 'cout' was not declared in this scope ../Source/driver.cpp:69: error: 'endl' was not declared in this scope ../Source/driver.cpp:78: error: 'AskNum' was not declared in this scope ../Source/driver.cpp:82: error: 'LoadDatabaseFile' was not declared in this scope ../Source/driver.cpp:86: error: 'ProcessDatabase' was not declared in this scope ../Source/driver.cpp:93: error: 'ProcessWebInterfaceModels' was not declared in this scope mv: cannot stat `.o': No such file or directory make: *\ [../Source/driver.o] Error 1 No user account found with name: !

samseaver commented 13 years ago

I had to export an environmental variable that wasn't added to the config files, something like export MODEL_SEED_CORE=/home/seaver/ModelSEEDCore/

and this fixed my issues (I had different issues because my MFAToolkit had already been compiled).

samseaver commented 13 years ago

In the latest update of the git repository, on biologin-4, running:

/vol/model-prod/env/config.sh .

in /home/seaver/ModelSEEDCore crashed with these errors in making MFAToolkit:

g++: CoreFoundation: No such file or directory g++: IOKit: No such file or directory

samseaver commented 13 years ago

This works for me now so I'm closing this issue for the time being.