Closed nconrad closed 7 years ago
I am familiar with this reaction in Valine degradation with the exception that it uses NAD/NADH instead of ferredoxin. EC 1.2.1.25 -- 2-oxoisovalerate dehydrogenase (acylating). This reaction may be a variant of that.
In any case, the reaction probably needs to be sanitized (trailing paren and possibly wrong ID).
I'd already intentionally removed it from the reactions.master.tsv file. It's properly formatted complement is rxn13962. It's preserved in a dump of the old biochemistry: ../Biochemistry/reactions.default.cf.tsv
On Wed, Oct 28, 2015 at 2:36 PM, nconrad notifications@github.com wrote:
In any case, the reaction probably needs to be sanitized (trailing paren and possibly wrong ID).
— Reply to this email directly or view it on GitHub https://github.com/ModelSEED/ModelSEEDDatabase/issues/23#issuecomment-151967161 .
Asst. Computational Scientist Mathematics and Computer Science Division Biosciences Division Argonne National Laboratory 9700 S. Cass Avenue Argonne, IL 60439
http://www.linkedin.com/pub/sam-seaver/0/412/168 samseaver@gmail.com (773) 796-7144
"We shall not cease from exploration And the end of all our exploring Will be to arrive where we started And know the place for the first time." --T. S. Eliot
@samseaver Sounds like you resolved this issue, may I close it?
Yep
@chian reports:
I have a reaction name “1281967929” with an ID "CoA-2-methylpropanoylating)” and an EQ "(1) 3-Methyl-2-oxobutanoate[c] + (1) CoA[c] + (1) Oxidizedferredoxin[c] <=> (1) CO2[c] + (1) Isobutyryl-CoA[c] + (1) Reducedferredoxin[c]”
(see http://modelseed.theseed.org/biochem/)