odd reaction 1281967929

[nconrad]

@chian reports:

I have a reaction name “1281967929” with an ID "CoA-2-methylpropanoylating)” and an EQ "(1) 3-Methyl-2-oxobutanoate[c] + (1) CoA[c] + (1) Oxidizedferredoxin[c] <=> (1) CO2[c] + (1) Isobutyryl-CoA[c] + (1) Reducedferredoxin[c]”

(see http://modelseed.theseed.org/biochem/)

[janakagithub]

I am familiar with this reaction in Valine degradation with the exception that it uses NAD/NADH instead of ferredoxin. EC 1.2.1.25 -- 2-oxoisovalerate dehydrogenase (acylating). This reaction may be a variant of that.

[nconrad]

In any case, the reaction probably needs to be sanitized (trailing paren and possibly wrong ID).

[samseaver]

I'd already intentionally removed it from the reactions.master.tsv file. It's properly formatted complement is rxn13962. It's preserved in a dump of the old biochemistry: ../Biochemistry/reactions.default.cf.tsv

On Wed, Oct 28, 2015 at 2:36 PM, nconrad notifications@github.com wrote:

In any case, the reaction probably needs to be sanitized (trailing paren and possibly wrong ID).

— Reply to this email directly or view it on GitHub https://github.com/ModelSEED/ModelSEEDDatabase/issues/23#issuecomment-151967161 .

Asst. Computational Scientist Mathematics and Computer Science Division Biosciences Division Argonne National Laboratory 9700 S. Cass Avenue Argonne, IL 60439

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[JamesJeffryes]

@samseaver Sounds like you resolved this issue, may I close it?

[samseaver]

Yep