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ModelSEED / ModelSEEDDatabase

This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
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possible compound name issue #7

Closed nconrad closed 9 years ago

nconrad commented 9 years ago

Just reporting that I saw an odd "[a]" in the middle of Benzo[a]pyrene-4,5-oxide[c] in reaction rxn04886

chian commented 9 years ago

https://en.m.wikipedia.org/wiki/Benzopyrene

These are unfortunately legitimate. I'm hoping we aren't using names to mark compartments and that it's part of the object...

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On Jul 15, 2015, at 9:58 AM, nconrad notifications@github.com wrote:

Just reporting that I saw an odd "[a]" in the middle of Benzo[a]pyrene-4,5-oxide[c] in reaction rxn04886

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samseaver commented 9 years ago

The regex we use splits equation strings first based on the ' + ' string that separates compounds, and then finds the compartments at the end of the compound strings, so in this case, we shouldn't be getting an error, are we?

nconrad commented 9 years ago

ok, I'm not aware of any errors, I figured I report to be safe. Closing.