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ModelSEED
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ModelSEEDpy
Python package for building and analyzing models using ModelSEED
MIT License
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genome IO
#150
Fxe
opened
3 days ago
0
msatpcorrection.py default path + reactions pathways
#149
Fxe
closed
1 month ago
0
changes in MSTemplate file to add additional biomass categories
#148
jplfaria
closed
6 days ago
0
update biomass with pigments and carbohydrates
#147
jplfaria
closed
3 months ago
1
readme
#146
Fxe
closed
4 months ago
0
bumped to version 0.4.0
#145
Fxe
closed
4 months ago
1
Fix RAST parsing
#144
Fxe
closed
7 months ago
0
MSCommunity and Msmodelutl edits
#143
freiburgermsu
opened
7 months ago
0
Major speed increase for the omics weighting function and edge case bug fix.
#142
jjacobson95
closed
7 months ago
0
minor fix
#141
Fxe
closed
11 months ago
0
Created Weighting function for gap fill. Example data needed for testing function.
#140
jjacobson95
closed
7 months ago
6
some small fixes to get the flexible biomass to work
#139
samseaver
opened
1 year ago
0
remove annotate_proteins_kmer_v1
#138
Fxe
closed
1 year ago
0
Fixes related to deploy of MS2 app
#137
cshenry
closed
1 year ago
0
fixing pre commit
#136
Fxe
closed
1 year ago
0
pathways in modelseed
#135
hariszaf
opened
1 year ago
0
Improvements to Model Report
#134
jplfaria
closed
1 year ago
0
Checking in annotation ontology model building, biochemistry fixes, growth phenotype analysis, improvements to ATP and gapfilling, and report improvements
#133
cshenry
closed
1 year ago
1
Bug: spontaneous reactions
#132
Fxe
opened
1 year ago
0
link failed
#131
Chao-NNU
opened
1 year ago
0
biomass index
#130
Fxe
closed
1 year ago
0
ATP media update
#129
Fxe
closed
1 year ago
0
cobrapy extracell warning
#128
Fxe
closed
1 year ago
0
Renaming ATP
#127
cshenry
closed
1 year ago
0
bug + gz
#126
Fxe
closed
1 year ago
0
Implementing multiple gapfill
#125
cshenry
closed
1 year ago
0
Bug Fix
#124
Fxe
closed
1 year ago
0
template compound naming
#123
Fxe
closed
1 year ago
0
Gapfilling error
#122
freiburgermsu
closed
1 year ago
2
building compound in biochme
#121
Fxe
closed
1 year ago
0
template species names
#120
Fxe
closed
1 year ago
0
Improving Gapfilling and ATP correction
#119
cshenry
closed
1 year ago
0
minor fix
#118
Fxe
closed
1 year ago
0
genome feature aliases
#117
Fxe
closed
1 year ago
0
Updates to fix gapfilling and string concatenation
#116
cshenry
closed
1 year ago
0
biomass bug fix
#115
Fxe
closed
1 year ago
0
biomass update
#114
Fxe
closed
1 year ago
0
Checking in biomass and gapfilling fixes 2
#113
cshenry
closed
1 year ago
0
Checking in biomass and gapfilling fixes
#112
cshenry
closed
1 year ago
0
notebook update
#111
Fxe
closed
1 year ago
0
fixed builder to detect biomass added compounds
#110
Fxe
closed
1 year ago
0
minor fixes
#109
Fxe
closed
1 year ago
0
reproducing a reconstruction from the ModelSEED platform
#108
hariszaf
opened
1 year ago
0
dependencies versions
#107
hariszaf
closed
1 year ago
6
updated ML and scikit-learn version
#106
Fxe
closed
1 year ago
0
biomass fix
#105
Fxe
closed
1 year ago
0
import fix
#104
Fxe
closed
1 year ago
0
Changes to support template biomass
#103
cshenry
closed
1 year ago
0
Ms dev
#102
freiburgermsu
closed
1 year ago
0
Bugs
#101
freiburgermsu
opened
1 year ago
1
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