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Moein-Karami / RandStrobes

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Segmentation fault #105

Closed ksahlin closed 1 year ago

ksahlin commented 1 year ago

Hi,

Thanks for the nice installation instructions. I however run into a segfault rumming Scripts/CreateAndEvaluate.sh (see below).

The sequence is a 100,000nt sequence in Data/data. Config parameters are: 

k 15
wmin 16
wmax 50
n 2
mask -1
number of samples 1
DataGenerator FromFile
ChosenConfigs/_FromFileDataGenerator_Human_Genome_FullyRandom_2_1.json
_FromFileDataGenerator_Human_Genome_FullyRandom_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 11696 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 23734 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_NoHash_max_GuoPibri_2_1.json
_FromFileDataGenerator_Human_Genome_NoHash_max_GuoPibri_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 23873 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 32111 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_NoHash_max_MAMod_2_1.json
_FromFileDataGenerator_Human_Genome_NoHash_max_MAMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 32176 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5:  7472 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_NoHash_max_SahlinBitCount_2_1.json
_FromFileDataGenerator_Human_Genome_NoHash_max_SahlinBitCount_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5:  7563 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 15274 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_NoHash_max_SahlinMod_2_1.json
_FromFileDataGenerator_Human_Genome_NoHash_max_SahlinMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 15309 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 23224 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_NoHash_max_Shen_2_1.json
_FromFileDataGenerator_Human_Genome_NoHash_max_Shen_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 23269 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 30991 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_NoHash_max_XorVar_2_1.json
_FromFileDataGenerator_Human_Genome_NoHash_max_XorVar_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 31078 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5:  6641 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_NoHash_min_GuoPibri_2_1.json
_FromFileDataGenerator_Human_Genome_NoHash_min_GuoPibri_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5:  6682 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 14443 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_NoHash_min_MAMod_2_1.json
_FromFileDataGenerator_Human_Genome_NoHash_min_MAMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 14517 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 22612 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_NoHash_min_SahlinBitCount_2_1.json
_FromFileDataGenerator_Human_Genome_NoHash_min_SahlinBitCount_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 22665 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 30809 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_NoHash_min_SahlinMod_2_1.json
_FromFileDataGenerator_Human_Genome_NoHash_min_SahlinMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 30913 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5:  6567 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_NoHash_min_Shen_2_1.json
_FromFileDataGenerator_Human_Genome_NoHash_min_Shen_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5:  6612 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 14319 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_NoHash_min_XorVar_2_1.json
_FromFileDataGenerator_Human_Genome_NoHash_min_XorVar_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 14344 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 22128 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_ThomasWangHash_max_GuoPibri_2_1.json
_FromFileDataGenerator_Human_Genome_ThomasWangHash_max_GuoPibri_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 22203 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 29950 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_ThomasWangHash_max_MAMod_2_1.json
_FromFileDataGenerator_Human_Genome_ThomasWangHash_max_MAMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 30024 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5:  5364 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_ThomasWangHash_max_SahlinBitCount_2_1.json
_FromFileDataGenerator_Human_Genome_ThomasWangHash_max_SahlinBitCount_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5:  5411 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 13163 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_ThomasWangHash_max_SahlinMod_2_1.json
_FromFileDataGenerator_Human_Genome_ThomasWangHash_max_SahlinMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 13198 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 20788 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_ThomasWangHash_max_Shen_2_1.json
_FromFileDataGenerator_Human_Genome_ThomasWangHash_max_Shen_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 20841 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 28290 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_ThomasWangHash_max_XorVar_2_1.json
_FromFileDataGenerator_Human_Genome_ThomasWangHash_max_XorVar_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 28335 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5:  3966 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_ThomasWangHash_min_GuoPibri_2_1.json
_FromFileDataGenerator_Human_Genome_ThomasWangHash_min_GuoPibri_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5:  4025 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 11964 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_ThomasWangHash_min_MAMod_2_1.json
_FromFileDataGenerator_Human_Genome_ThomasWangHash_min_MAMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 12009 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 20071 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_ThomasWangHash_min_SahlinBitCount_2_1.json
_FromFileDataGenerator_Human_Genome_ThomasWangHash_min_SahlinBitCount_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 20102 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 27739 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_ThomasWangHash_min_SahlinMod_2_1.json
_FromFileDataGenerator_Human_Genome_ThomasWangHash_min_SahlinMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 27790 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5:  3080 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_ThomasWangHash_min_Shen_2_1.json
_FromFileDataGenerator_Human_Genome_ThomasWangHash_min_Shen_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5:  3123 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 10775 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_ThomasWangHash_min_XorVar_2_1.json
_FromFileDataGenerator_Human_Genome_ThomasWangHash_min_XorVar_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 10824 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 18628 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_WyHash_max_GuoPibri_2_1.json
_FromFileDataGenerator_Human_Genome_WyHash_max_GuoPibri_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 18681 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 26308 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_WyHash_max_LiuPatroLi_2_1.json
_FromFileDataGenerator_Human_Genome_WyHash_max_LiuPatroLi_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 26367 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5:  1792 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_WyHash_max_MAMod_2_1.json
_FromFileDataGenerator_Human_Genome_WyHash_max_MAMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5:  1820 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5:  9463 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_WyHash_max_SahlinBitCount_2_1.json
_FromFileDataGenerator_Human_Genome_WyHash_max_SahlinBitCount_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5:  9530 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 17189 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_WyHash_max_SahlinMod_2_1.json
_FromFileDataGenerator_Human_Genome_WyHash_max_SahlinMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 17226 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 25204 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_WyHash_max_Shen_2_1.json
_FromFileDataGenerator_Human_Genome_WyHash_max_Shen_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 25259 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5:   696 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_WyHash_max_XorVar_2_1.json
_FromFileDataGenerator_Human_Genome_WyHash_max_XorVar_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5:   713 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5:  8638 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_WyHash_min_GuoPibri_2_1.json
_FromFileDataGenerator_Human_Genome_WyHash_min_GuoPibri_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5:  8691 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 16191 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_WyHash_min_LiuPatroLi_2_1.json
_FromFileDataGenerator_Human_Genome_WyHash_min_LiuPatroLi_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 16232 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 24222 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_WyHash_min_MAMod_2_1.json
_FromFileDataGenerator_Human_Genome_WyHash_min_MAMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 24267 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 31960 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_WyHash_min_SahlinBitCount_2_1.json
_FromFileDataGenerator_Human_Genome_WyHash_min_SahlinBitCount_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 32025 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5:  7420 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_WyHash_min_SahlinMod_2_1.json
_FromFileDataGenerator_Human_Genome_WyHash_min_SahlinMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5:  7453 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 15262 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_WyHash_min_Shen_2_1.json
_FromFileDataGenerator_Human_Genome_WyHash_min_Shen_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 15299 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 23096 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_WyHash_min_XorVar_2_1.json
_FromFileDataGenerator_Human_Genome_WyHash_min_XorVar_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 23159 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 30991 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_XXHash_max_GuoPibri_2_1.json
_FromFileDataGenerator_Human_Genome_XXHash_max_GuoPibri_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 31050 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5:  6186 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_XXHash_max_LiuPatroLi_2_1.json
_FromFileDataGenerator_Human_Genome_XXHash_max_LiuPatroLi_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5:  6251 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 13912 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_XXHash_max_MAMod_2_1.json
_FromFileDataGenerator_Human_Genome_XXHash_max_MAMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 13967 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 21946 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_XXHash_max_SahlinBitCount_2_1.json
_FromFileDataGenerator_Human_Genome_XXHash_max_SahlinBitCount_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 21997 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 30047 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_XXHash_max_SahlinMod_2_1.json
_FromFileDataGenerator_Human_Genome_XXHash_max_SahlinMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 30074 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5:  5685 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_XXHash_max_Shen_2_1.json
_FromFileDataGenerator_Human_Genome_XXHash_max_Shen_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5:  5740 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 13620 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_XXHash_max_XorVar_2_1.json
_FromFileDataGenerator_Human_Genome_XXHash_max_XorVar_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 13677 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 21221 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_XXHash_min_GuoPibri_2_1.json
_FromFileDataGenerator_Human_Genome_XXHash_min_GuoPibri_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 21278 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 28557 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_XXHash_min_LiuPatroLi_2_1.json
_FromFileDataGenerator_Human_Genome_XXHash_min_LiuPatroLi_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 28604 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5:  4245 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_XXHash_min_MAMod_2_1.json
_FromFileDataGenerator_Human_Genome_XXHash_min_MAMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5:  4314 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 12051 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_XXHash_min_SahlinBitCount_2_1.json
_FromFileDataGenerator_Human_Genome_XXHash_min_SahlinBitCount_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 12114 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 19998 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_XXHash_min_SahlinMod_2_1.json
_FromFileDataGenerator_Human_Genome_XXHash_min_SahlinMod_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 20041 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 27681 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_XXHash_min_Shen_2_1.json
_FromFileDataGenerator_Human_Genome_XXHash_min_Shen_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5: 27760 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5:  3350 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created
ChosenConfigs/_FromFileDataGenerator_Human_Genome_XXHash_min_XorVar_2_1.json
_FromFileDataGenerator_Human_Genome_XXHash_min_XorVar_2_1.csv
./Scripts/CreateAndEvaluate.sh: line 5:  3415 Segmentation fault      (core dumped) ./RandStrobes.out "$config" "$name"
RandStrobes are created
Read Header
./Scripts/CreateAndEvaluate.sh: line 5: 11117 Segmentation fault      (core dumped) ./metric.out "$name"
Metrics are created

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> rmarkdown::render('EvaluationWithR/PlotMaker.Rmd')
Error in loadNamespace(name) : there is no package called ‘rmarkdown’
Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Moein-Karami commented 1 year ago

Hello. Thanks for letting us know about the issue. It is solved.