not in gzip format - error

Mohamedema / NGS_Group_project

RNA-Seq analysis

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not in gzip format - error #10

Open nofal-50404 opened 4 years ago

nofal-50404 commented 4 years ago

We have a .fq.gz file and we tried to make "fastqc" for each read using terminal by the following commands. However, using gzip, gunzip and tar but gave error for f in ~/ngs2/fqData/*.fq.gz;do fastqc fastq -noextract $f;done

Error: not in gzip format

mariam50411 commented 4 years ago

we will change the file name suffix to into .fq then we will gzip them again using a python script.