Closed NouranTantawy closed 4 years ago
Non_Tumor_NT_AA_004_1.fq.gz Non_Tumor_NT_AA_004_2.fq.gz Non_Tumor_NT_BB_005_1.fq.gz Non_Tumor_NT_CC_007_1.fq.gz Non_Tumor_NT_BB_005_2.fq.gz Non_Tumor_NT_CC_007_2.fq.gz
Tumor_T_A_004_2.fq.gz Tumor_T_A_004_1.fq.gz Tumor_T_B_005_1.fq.gz Tumor_T_B_005_2.fq.gz Tumor_T_C_007_2.fq.gz Tumor_T_C_007_1.fq.gz
All of these reads are renamed to be ended without this suffix (fq.gz) as they are a binary file if they are found in this format
6 reads are only used (paired-end):
3 paired-end samples :
Non_Tumor_NT_AA_004_1.fq.gz Non_Tumor_NT_AA_004_2.fq.gz Non_Tumor_NT_BB_005_1.fq.gz Non_Tumor_NT_CC_007_1.fq.gz Non_Tumor_NT_BB_005_2.fq.gz Non_Tumor_NT_CC_007_2.fq.gz
3 paired-end samples tumor
Tumor_T_A_004_2.fq.gz Tumor_T_A_004_1.fq.gz Tumor_T_B_005_1.fq.gz Tumor_T_B_005_2.fq.gz Tumor_T_C_007_2.fq.gz Tumor_T_C_007_1.fq.gz
All of these reads are renamed to be ended without this suffix (fq.gz) as they are a binary file if they are found in this format