Open ChayaSt opened 4 years ago
Yup, this is something that we have been looking at doing for some time. The major issue is that our 3dMol.js pick for molecular visualization is not DOM-wrapped which means that its widget integration is limited. I think we will have to switch over to nglview for this kind of tech, but nglview doesn't have the volumetric rending for orbitals... this will be fun.
This is something I will get back to early September unless someone else tackles it first.
but nglview doesn't have the volumetric rending for orbitals.
@dgasmith does orbital's volume data have its own format?
Those are supported ones in NGL
: MRC/MAP/CCP4, DX/DXBIN, CUBE, BRIX/DSN6, XPLOR/CNS
Do you have sample file? Thanks.
On Wed, Aug 21, 2019 at 1:19 PM Daniel Smith notifications@github.com wrote:
@hainm https://github.com/hainm We could give you any of those formats. Looking through your docs I see this https://github.com/arose/nglview/blob/master/examples/images/display_ccp4_file.md which I missed before (sorry!). Could you provide orbital rendering similar to what you see in the bottom left here https://3dmol.csb.pitt.edu?
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Do you have sample file? Thanks.
nevermind, it's in 3dmol repo.
Could you provide orbital rendering similar to what you see in the bottom left here?
I think so, close enough, please see below:
Ok, I'm sold :). I will look into integration when I get from a few trips.
PS: Will you happen to be at ACS? Might be a good time to hack a few things out.
PS: Will you happen to be at ACS?
No I won't. Do feel free do open any issue in nglview.
Is your feature request related to a problem? Please describe. When exploring a geometry optimization trajectory or a torsion scan, each molecule needs to be loaded separately which can become cumbersome.
Describe the solution you'd like Something like NGLViewer to scroll through conformations in a torsion scan or geometry optimization.