Molara-Lab / Molara

Molara is a Python package for the visualization of chemical structures such as molecules or crystals. It provides a graphical user interface for importing structures from output files of popular computational chemistry software as well as for creating custom structures.
GNU General Public License v3.0
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Issue 372: Logarithmic scaling of zoom factor #384

Closed DariaBabushkina closed 2 months ago

DariaBabushkina commented 2 months ago

Added a logarithmic scaling to the zoom factor, so that it works properly for larger systems

coderabbitai[bot] commented 2 months ago

Walkthrough

The changes across the codebase focus on refining type hinting, enhancing robustness with assertions, managing dependencies, and aligning testing logic. These updates aim to improve code reliability, maintainability, and performance in various modules.

Changes

Files Summary of Changes
.github/workflows/lint.yml, .pre-commit-config.yaml Updated dependency management and linting configurations.
src/molara/Gui/..., src/molara/Structure/..., src/molara/Rendering/... Improved type annotations, added assertions, and refined code handling in GUI, structure, and rendering components.
tests/molara/Structure/test_molecule.py, tests/molara/rendering/test_camera.py Adjusted testing logic to align with codebase changes.

🐇✨
A rabbit hopped through the code,
Sprinkling type hints along its road.
With a twitch of its nose, and a flick of its ear,
Assertions added, oh so clear!
Now with every hop, skip, and leap,
The code runs smooth, no errors to keep.
🌟🐾


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codecov[bot] commented 2 months ago

Codecov Report

Attention: Patch coverage is 68.88889% with 14 lines in your changes are missing coverage. Please review.

Project coverage is 71.75%. Comparing base (79e3896) to head (0bc347c).

:exclamation: Current head 0bc347c differs from pull request most recent head cb211c1. Consider uploading reports for the commit cb211c1 to get more accurate results

Files Patch % Lines
src/molara/Gui/builder.py 11.11% 8 Missing :warning:
src/molara/Structure/io/importer_crystal.py 42.85% 4 Missing :warning:
src/molara/Structure/crystal.py 0.00% 1 Missing :warning:
src/molara/Structure/io/importer.py 90.90% 1 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #384 +/- ## ========================================== - Coverage 71.81% 71.75% -0.06% ========================================== Files 40 40 Lines 3474 3495 +21 ========================================== + Hits 2495 2508 +13 - Misses 979 987 +8 ```

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