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Moldia / Lee_2023

All the code described in the Lee et al. (2023) paper
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compatibiity issues with CUDA toolkit and cuDNN at the system level on ISS_deconvolution #7

Closed mgcizzu closed 1 month ago

mgcizzu commented 1 month ago

ISS_deconvolution runs on python 3.6, which has a strict requirement for CUDA 11.2 and cuDNN 8.1. These are too old now to be installed at the system level, but it is now possible to install them at the environment level, so we should amend the .yml file to include cudnn=8.1 cudatoolkit=11.2

As a temporary patch, it is possible to run: conda install cudatoolkit=11.2 -c conda-forge conda install cudnn=8.1 -c conda-forge

after the creation and installation of the ISS_deconvolution environment and toolbox.

mgcizzu commented 1 month ago

Incorporated the changes to the yml and tested them. Issue closed