iprotsyuk
commented
5 years ago Hi @stan1233,
Sorry for the delay. This is strange that you don't see any red text in the console, and indeed the text you sent previously doesn't contain any error message, just regular warnings. I can see though that you're using KNIME 3.5, which is a significantly newer version than the one Optimus is supposed to work with. Unfortunately, KNIME developers don't pay too much attention to backward-compatibility so I'd strongly recommend using the version of KNIME Optimus was tested with, which is 3.3.1. The video tutorial you're referring to is definitely useful, but it doesn't provide you with necessary guidance for proper environment installation (KNIME & Python). I'd recommend you to check out either our Nature Protocols paper or the README file in this repository to find step-by-step instruction on Optimus installation. Remember that after everything's installed KNIME is going to prompt you to update its components to the latest version, and you should ignore this to keep Optimus working. Let me know how it goes.
HI, When i according to this VIDEO TUTORIAL step by step, i execute the node(save results) something wrong with Optimus. this is the console in console, all the color of the character are purple, no red.
Welcome to the KNIME Analytics Platform v3.5.3.v201804031105 Copyright by KNIME AG, Zurich, Switzerland
Log file is located at: C:\Users\Luogy\knime-workspace.metadata\knime\knime.log WARN NewReleaseMessageInjector Could not modify intro page: connect timed out WARN TipsAndNewsInjector Could not modify intro page: connect timed out WARN File Reader 0:347 Can't access 'file:/D:/stub.txt'. (D:\stub.txt (系统找不到指定的文件。)) WARN File Reader 0:349 Can't access 'file:/D:/stub.txt'. (D:\stub.txt (系统找不到指定的文件。)) WARN File Reader 0:390 Can't access 'file:/D:/stub.txt'. (D:\stub.txt (系统找不到指定的文件。)) WARN File Reader 0:397 Can't access 'file:/D:/stub.txt'. (D:\stub.txt (系统找不到指定的文件。)) WARN Input Directory 0:424 Directory missing WARN Python Edit Variable (deprecated) 0:423:306:282 Errors overwriting node settings with flow variables: Unknown variable "PYTHON_NODES_MAX_ROW_COUNT" WARN LoadWorkflowRunnable Warnings during load: Status: Warning: Optimus_v1.5.1(origin) 0 loaded with warnings WARN LoadWorkflowRunnable Status: Warning: Optimus_v1.5.1(origin) 0 WARN LoadWorkflowRunnable Status: Warning: File Reader 0:347 WARN LoadWorkflowRunnable Status: Warning: State has changed from CONFIGURED to IDLE WARN LoadWorkflowRunnable Status: Warning: File Reader 0:349 WARN LoadWorkflowRunnable Status: Warning: State has changed from CONFIGURED to IDLE WARN LoadWorkflowRunnable Status: Warning: File Reader 0:390 WARN LoadWorkflowRunnable Status: Warning: State has changed from CONFIGURED to IDLE WARN LoadWorkflowRunnable Status: Warning: File Reader 0:397 WARN LoadWorkflowRunnable Status: Warning: State has changed from CONFIGURED to IDLE WARN File Reader 0:397 Didn't get any value for column(s) with index #1, #3. Please verify column type(s). WARN File Reader 0:397 Didn't get any value for column(s) with index #1, #3. Please verify column type(s). WARN Python Edit Variable (deprecated) 0:423:306:282 Errors overwriting node settings with flow variables: Unknown variable "PYTHON_NODES_MAX_ROW_COUNT" WARN Python Edit Variable (deprecated) 0:423:306:282 Errors overwriting node settings with flow variables: Unknown variable "PYTHON_NODES_MAX_ROW_COUNT" WARN File Reader 0:390 Didn't get any value for column(s) with index #0. Please verify column type(s). WARN File Reader 0:347 Didn't get any value for column(s) with index #0. Please verify column type(s). WARN File Reader 0:390 Node created an empty data table. WARN File Reader 0:347 Node created an empty data table. WARN Python Source (deprecated) 0:413:332:307:304:284 Node created an empty data table. WARN Python Source (deprecated) 0:413:327:326:325 Node created an empty data table. WARN CASE Switch Variable (Start) 0:423:381:283 Errors overwriting node settings with flow variables: Unknown variable "optimization_branch_number" WARN CASE Switch Variable (Start) 0:423:381:283 Errors overwriting node settings with flow variables: Unknown variable "optimization_branch_number" WARN CASE Switch Variable (Start) 0:423:381:283 Errors overwriting node settings with flow variables: Unknown variable "optimization_branch_number" WARN CASE Switch Variable (Start) 0:423:381:283 Errors overwriting node settings with flow variables: Unknown variable "optimization_branch_number" WARN CASE Switch Variable (Start) 0:423:381:283 Errors overwriting node settings with flow variables: Unknown variable "optimization_branch_number" WARN CASE Switch Variable (Start) 0:423:381:283 Errors overwriting node settings with flow variables: Unknown variable "optimization_branch_number" WARN CASE Switch Variable (Start) 0:423:381:283 Errors overwriting node settings with flow variables: Unknown variable "optimization_branch_number" WARN CASE Switch Variable (Start) 0:423:381:283 Errors overwriting node settings with flow variables: Unknown variable "optimization_branch_number" WARN Empty Table Switch 0:423:325:226 Node created an empty data table. WARN End IF 0:423:325:227 Node created an empty data table. WARN FeatureFinderMetabo 0:423:394:41:53 Errors loading flow variables into node : Int for key "GENERIC_KNIME_NODES_outtype#1" not found. WARN FeatureFinderMetabo 0:423:394:2 Errors loading flow variables into node : Int for key "GENERIC_KNIME_NODES_outtype#1" not found. WARN FeatureFinderMetabo 0:423:394:41:45 Errors loading flow variables into node : Int for key "GENERIC_KNIME_NODES_outtype#1" not found. WARN FeatureFinderMetabo 0:423:394:41:30 Errors loading flow variables into node : Int for key "GENERIC_KNIME_NODES_outtype#1" not found. WARN FeatureFinderMetabo 0:423:394:41:61 Errors loading flow variables into node : Int for key "GENERIC_KNIME_NODES_outtype#1" not found. WARN FeatureFinderMetabo 0:423:394:41:53 Errors loading flow variables into node : Int for key "GENERIC_KNIME_NODES_outtype#1" not found. WARN FeatureFinderMetabo 0:423:394:41:30 Errors loading flow variables into node : Int for key "GENERIC_KNIME_NODES_outtype#1" not found. WARN FeatureFinderMetabo 0:423:394:41:45 Errors loading flow variables into node : Int for key "GENERIC_KNIME_NODES_outtype#1" not found. WARN FeatureFinderMetabo 0:423:394:2 Errors loading flow variables into node : Int for key "GENERIC_KNIME_NODES_outtype#1" not found. WARN FeatureFinderMetabo 0:423:394:41:61 Errors loading flow variables into node : Int for key "GENERIC_KNIME_NODES_outtype#1" not found.
I am very appreciate to this work and helpful to my feature study. Thanks for your time to solve my problem!
Stan