search

Molmed / checkQC

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
http://checkqc.readthedocs.io/
GNU General Public License v3.0
25 stars 16 forks source link

Q30 handler #18

Closed matrulda closed 7 years ago

matrulda commented 7 years ago

checkQC can now check percent Q30.

Also discovered that some tests were "cheating" by checking if true instead of equal.

codecov[bot] commented 7 years ago

Codecov Report

Merging #18 into master will increase coverage by 0.38%. The diff coverage is 91.66%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #18      +/-   ##
==========================================
+ Coverage   85.15%   85.53%   +0.38%     
==========================================
  Files          15       16       +1     
  Lines         384      408      +24     
==========================================
+ Hits          327      349      +22     
- Misses         57       59       +2
Impacted Files Coverage Δ
checkQC/parsers/interop_parser.py 85.71% <100%> (+1.09%) :arrow_up:
checkQC/handlers/q30_handler.py 90.9% <90.9%> (ø)

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update 24e4789...88705e5. Read the comment docs.