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Molmed / checkQC

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
http://checkqc.readthedocs.io/
GNU General Public License v3.0
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Improved information in log output and README #38

Closed johandahlberg closed 7 years ago

johandahlberg commented 7 years ago

This PR adds more information into the output, both in the normal logging and in the --json mode. The main thing is that it will include the thresholds set for the handlers into the output, but it will also tell the user which run type it has determined for the runfolder.

codecov[bot] commented 7 years ago

Codecov Report

Merging #38 into master will increase coverage by 1%. The diff coverage is 100%.

Impacted file tree graph

@@         Coverage Diff          @@
##           master   #38   +/-   ##
====================================
+ Coverage      91%   91%   +1%     
====================================
  Files          17    18    +1     
  Lines         624   648   +24     
====================================
+ Hits          563   587   +24     
  Misses         61    61
Impacted Files Coverage Δ
checkQC/run_type_summarizer.py 100% <100%> (ø)
checkQC/__init__.py 100% <100%> (ø) :arrow_up:
checkQC/app.py 91% <100%> (+1%) :arrow_up:

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b97pla commented 7 years ago

Great!