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Molmed / checkQC

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
http://checkqc.readthedocs.io/
GNU General Public License v3.0
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Path to bcl2fastq output in config #47

Closed matrulda closed 6 years ago

matrulda commented 6 years ago

CheckQC assumes that output from bcl2fastq is located in a sub directory called Unaligned, but output is by default written to <RUNFOLDER>/Data/Intensities/BaseCalls. It would be nice if the location of the bcl2fastq output could be specified in the config.